too-many-cells: Cluster single cells and analyze cell clade relationships.

[ bioinformatics, gpl, library, program ] [ Propose Tags ]

Different methods to cluster and analyze single cell data with diversity indices and differential expression.

Versions [faq] 0.1.0.0, 0.1.0.1
Dependencies aeson (>=1.4.0.0), base (>=4.11.1.0 && <5), birch-beer (>=0.1.0.0), bytestring (>=0.10.8.2), cassava (>=0.5.1.0), colour (>=2.3.4), containers (>=0.5.11.0), deepseq (>=1.4.3.0), diagrams (>=1.4), diagrams-cairo (>=1.4.1), diagrams-graphviz (>=1.4.1), diagrams-lib (>=1.4.2.3), differential (>=0.1.1.0), directory (>=1.3.1.5), diversity (>=0.8.1.0), fgl (>=5.6.0.0), filepath (>=1.4.2), find-clumpiness (>=0.2.3.1), foldl (>=1.4.2), graphviz (>=2999.20.0.2), hierarchical-clustering (>=0.4.6), hierarchical-spectral-clustering (>=0.2.1.0), hmatrix (>=0.19.0.0), inline-r (>=0.9.2), lens (>=4.16.1), managed (>=1.0.6), matrix-market-attoparsec (>=0.1.0.8), mltool (>=0.2.0.1), modularity (>=0.2.0.3), mtl (>=2.2.2), optparse-generic (>=1.3.0), palette (>=0.3.0.1), parallel (>=3.2.1.1), plots (>=0.1.0.2), safe (>=0.3.17), scientific (>=0.3.6.2), sparse-linear-algebra (>=0.3.1), spectral-clustering (>=0.2.1.2), split (>=0.2.3.3), statistics (>=0.14.0.2), streaming (>=0.2.1.0), streaming-bytestring (>=0.1.6), streaming-cassava (>=0.1.0.1), streaming-utils (>=0.1.4.7), streaming-with (>=0.2.2.1), SVGFonts (>=1.6.0.3), terminal-progress-bar (>=0.2), text (>=1.2.3.0), text-show (>=3.7.4), too-many-cells, transformers (>=0.5.5.0), vector (>=0.12.0.1), vector-algorithms (>=0.7.0.1) [details]
License GPL-3.0-only
Copyright 2018 Gregory W. Schwartz
Author Gregory W. Schwartz
Maintainer gsch@pennmedicine.upenn.edu
Category Bioinformatics
Home page http://github.com/GregorySchwartz/too-many-cells#readme
Source repo head: git clone https://github.com/GregorySchwartz/too-many-cells
Uploaded by GregorySchwartz at Mon Jan 21 02:38:04 UTC 2019
Distributions NixOS:0.1.0.0
Executables too-many-cells
Downloads 31 total (31 in the last 30 days)
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Status Hackage Matrix CI
Docs not available [build log]
All reported builds failed as of 2019-01-21 [all 3 reports]

Modules

  • TooManyCells
    • Differential
      • TooManyCells.Differential.Differential
      • TooManyCells.Differential.Types
    • Diversity
      • TooManyCells.Diversity.Diversity
      • TooManyCells.Diversity.Load
      • TooManyCells.Diversity.Plot
      • TooManyCells.Diversity.Types
    • File
      • TooManyCells.File.Types
    • MakeTree
      • TooManyCells.MakeTree.Adjacency
      • TooManyCells.MakeTree.Clumpiness
      • TooManyCells.MakeTree.Cluster
      • TooManyCells.MakeTree.Load
      • TooManyCells.MakeTree.Plot
      • TooManyCells.MakeTree.Print
      • TooManyCells.MakeTree.Types
    • Matrix
      • TooManyCells.Matrix.Load
      • TooManyCells.Matrix.Preprocess
      • TooManyCells.Matrix.Types
      • TooManyCells.Matrix.Utility
    • Paths
      • TooManyCells.Paths.Distance
      • TooManyCells.Paths.Plot
      • TooManyCells.Paths.Types

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