The BiobaseFasta package

[Tags:gpl, library, program]

Enumeratees for FASTA-handling and convenience functions. In a typical application, the user should write an enumeratee to extract information to allow for efficient low-memory handling of queries.

Facilities for fast, efficient linear scans are provided. These functions are not yet stable and could move to another library, if more data sources require efficient scans.

The library is, in general, in a preview state. In cases where you need to scan large FASTA files fast and with low memory overhead, the enumeratees should, however, already be useable enough.

Properties

Versions 0.0.0.1, 0.0.0.2, 0.0.0.3, 0.0.0.4, 0.0.1.0
Dependencies base (>3 && <5), bytestring, iteratee, iteratee-compress, transformers [details]
License GPL-3
Copyright Christian Hoener zu Siederdissen, 2011
Author Christian Hoener zu Siederdissen
Maintainer choener@tbi.univie.ac.at
Stability experimental
Category Bioinformatics
Home page http://www.tbi.univie.ac.at/~choener/
Source repository head: git clone git://github.com/choener/BiobaseFasta
Uploaded Mon Feb 27 00:35:00 UTC 2012 by ChristianHoener
Distributions NixOS:0.0.1.0
Downloads 1548 total (12 in the last 30 days)
Votes
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Status Docs uploaded by user
Build status unknown [no reports yet]

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