Biobase.Primary.Bounds
Contents
Description
A special class of bounds for RNA/pair encodings that are used to index into tables. We typically encode more in the alphabets than we want to use to index, so in order to keep things simple, we have specialized bounds.
- class Bounded a => Bounds a where
- minNormal :: a
- maxNormal :: a
- minExtended :: a
- maxExtended :: a
Documentation
class Bounded a => Bounds a whereSource
minNormal and maxNormal encode for, say, ACGU; while minExtended and
maxExtended would allow N as well. See Biobase.RNA and
Biobase.RNA.ViennaPair for instances.
Instances
| Bounds Nuc | Special bounds for energy / score arrays |
| Bounds CTisomerism | |
| Bounds Edge | |
| Bounds ViennaPair | |
| (Bounds a, Bounds b) => Bounds (a, b) | |
| (Bounds a, Bounds b, Bounds c) => Bounds (a, b, c) | |
| (Bounds a, Bounds b, Bounds c, Bounds d) => Bounds (a, b, c, d) | |
| (Bounds a, Bounds b, Bounds c, Bounds d, Bounds e) => Bounds (a, b, c, d, e) | |
| (Bounds a, Bounds b, Bounds c, Bounds d, Bounds e, Bounds f) => Bounds (a, b, c, d, e, f) |