Safe Haskell	None
Language	Haskell2010

Biobase.Primary.AA

Contents

Creating functions and aa data.
lookup tables
instances

Description

This module has the translation tables for the genetic code. We do have a symbol Undef for undefined amino acids (say because of Ns in the nucleotide code).

Synopsis

Documentation

data AA Source

Amino acid phantom type.

Instances

Enum (Letter AA)
Read (Letter AA)
Show (Letter AA)
MkPrimary (Vector Char) AA

pattern Stop :: Letter AA Source

pattern A :: Letter AA Source

pattern B :: Letter AA Source

pattern C :: Letter AA Source

pattern D :: Letter AA Source

pattern E :: Letter AA Source

pattern F :: Letter AA Source

pattern G :: Letter AA Source

pattern H :: Letter AA Source

pattern I :: Letter AA Source

pattern K :: Letter AA Source

pattern L :: Letter AA Source

pattern M :: Letter AA Source

pattern N :: Letter AA Source

pattern P :: Letter AA Source

pattern Q :: Letter AA Source

pattern R :: Letter AA Source

pattern S :: Letter AA Source

pattern T :: Letter AA Source

pattern V :: Letter AA Source

pattern W :: Letter AA Source

pattern X :: Letter AA Source

pattern Y :: Letter AA Source

pattern Z :: Letter AA Source

pattern Undef :: Letter AA Source

Creating functions and aa data.

aa :: Int -> Letter AA Source

aaRange :: [Letter AA] Source

charAA :: Char -> Letter AA Source

Translate Char amino acid representation into efficient AA newtype.

aaChar :: Letter AA -> Char Source

Char representation of an AA.

lookup tables

charBaa :: Bimap Char (Letter AA) Source

Documentation

Creating functions and aa data.

lookup tables

instances