Genbank: Libary for processing the NCBI genbank format

[ bioinformatics, library, program ] [ Propose Tags ]

Haskell cabal Genbank libary contains tools, parser and datastructures for the NCBI (National Center for Biotechnology Information) Genbank format.

For more information on genbank refer to: http://www.ncbi.nlm.nih.gov/genbank/

For a sample genbank record see: http://www.ncbi.nlm.nih.gov/Sitemap/samplerecord.html

###GenbankData - Datastructures for Genbank format

Contains Haskell datastructures for Genbank format and for contained features, subfeatures

###GenbankParser - Parse Genbank format

Contains Haskell functions to parse Genbank format from files or internal Strings.

###GenbankTools - Tools for processing Genbank

Contains Haskell functions to extract nucleotide sequences for features


[Skip to Readme]
Versions [faq] 1.0.0, 1.0.1, 1.0.2, 1.0.3
Dependencies base (>=4.5 && <5), biocore, biofasta, bytestring, parsec, split [details]
License LicenseRef-GPL
Author Florian Eggenhofer
Maintainer egg@tbi.univie.ac.at
Category Bioinformatics
Source repo head: git clone https://github.com/eggzilla/Genbank
this: git clone https://github.com/eggzilla/Genbank/tree/v1.0.0(tag v1.0.0)
Uploaded by FlorianEggenhofer at Mon Sep 8 20:08:05 UTC 2014
Distributions NixOS:1.0.3
Downloads 2825 total (98 in the last 30 days)
Rating (no votes yet) [estimated by rule of succession]
Your Rating
  • λ
  • λ
  • λ
Status Hackage Matrix CI
Docs uploaded by user
Build status unknown [no reports yet]

Modules

[Index]

Downloads

Maintainer's Corner

For package maintainers and hackage trustees


Readme for Genbank-1.0.0

[back to package description]

#Genbank Haskell cabal Genbank libary contains tools, parser and datastructures for the NCBI (National Center for Biotechnology Information) Genbank format. For more information on genbank refer to: http://www.ncbi.nlm.nih.gov/genbank/ For a sample genbank record see: http://www.ncbi.nlm.nih.gov/Sitemap/samplerecord.html ###Datastructures for Genbank format (GenbankData.hs) Contains Haskell datastructures for Genbank format and for contained features, subfeatures ###Parse Genbank format (GenbankParser.hs) Contains Haskell functions to parse Genbank format from files or internal Strings. ###Tools for processing Genbank (GenbankTools) Contains Haskell functions to extract nucleotide sequences for features