Safe Haskell | None |
---|---|
Language | Haskell2010 |
Synopsis
- newtype BAM = BAM {
- unbam :: ForeignPtr Bam1
- newtype BAMHeader = BAMHeader {}
- showBamHeader :: BAMHeader -> ByteString
- data SortOrder
- data SAM = SAM {
- _sam_qname :: !ByteString
- _sam_flag :: !Word16
- _sam_rname :: !(Maybe ByteString)
- _sam_pos :: !Int
- _sam_mapq :: !Word8
- _sam_cigar :: !(Maybe [(Int, Char)])
- _sam_rnext :: !(Maybe ByteString)
- _sam_pnext :: !Int
- _sam_tlen :: !Int
- _sam_seq :: !(Maybe ByteString)
- _sam_qual :: !(Maybe ByteString)
- _sam_aux :: [((Char, Char), AuxiliaryData)]
- data AuxiliaryData
- showSam :: SAM -> ByteString
Documentation
showBamHeader :: BAMHeader -> ByteString Source #
BAM sort order.
The SAM format.
SAM | |
|
data AuxiliaryData Source #
Auxiliary data
AuxChar Char | |
AuxInt Int | |
AuxFloat Float | |
AuxString ByteString | |
AuxByteArray ByteString | |
AuxIntArray [Int] | |
AuxFloatArray [Float] |
Instances
Show AuxiliaryData Source # | |
Defined in Bio.HTS.Types showsPrec :: Int -> AuxiliaryData -> ShowS # show :: AuxiliaryData -> String # showList :: [AuxiliaryData] -> ShowS # |
showSam :: SAM -> ByteString Source #