Contents
Index
HsHTSLib-1.9.1: Bindings to htslib.
Index
appendAux
Bio.HTS
AuxByteArray
Bio.HTS.Types
AuxChar
Bio.HTS.Types
auxData
Bio.HTS
AuxFloat
Bio.HTS.Types
AuxFloatArray
Bio.HTS.Types
AuxiliaryData
Bio.HTS.Types
AuxInt
Bio.HTS.Types
AuxIntArray
Bio.HTS.Types
AuxString
Bio.HTS.Types
BAM
1 (Type/Class)
Bio.HTS.Types
2 (Data Constructor)
Bio.HTS.Types
Bam1
Bio.HTS.Internal
bamAuxAppend
Bio.HTS.Internal
bamAuxGet
Bio.HTS.Internal
bamChr
Bio.HTS.Internal
bamEndpos
Bio.HTS.Internal
bamGetAux
Bio.HTS.Internal
bamGetCigar
Bio.HTS.Internal
bamGetLAux
Bio.HTS.Internal
bamGetQual
Bio.HTS.Internal
bamGetSeq
Bio.HTS.Internal
BamHdr
Bio.HTS.Internal
bamHdrRead
Bio.HTS.Internal
bamHdrWrite
Bio.HTS.Internal
BAMHeader
1 (Type/Class)
Bio.HTS.Types
2 (Data Constructor)
Bio.HTS.Types
bamIsRev
Bio.HTS.Internal
bamRead1
Bio.HTS.Internal
bamToSam
Bio.HTS
bamWrite1
Bio.HTS.Internal
BGZF
Bio.HTS.Internal
cigar
Bio.HTS
Coordinate
Bio.HTS.Types
endLoc
Bio.HTS
flag
Bio.HTS
getBamHeader
Bio.HTS
getBgzf
Bio.HTS.Internal
getChr
Bio.HTS
getChrId
Bio.HTS
getHeaderSize
Bio.HTS.Internal
getHeaderText
Bio.HTS.Internal
getSeq
Bio.HTS
getSortOrder
Bio.HTS
hasMultiSegments
Bio.HTS
htsClose
Bio.HTS.Internal
HTSFile
Bio.HTS.Internal
htsOpen
Bio.HTS.Internal
isBadQual
Bio.HTS
isDup
Bio.HTS
isFirstSegment
Bio.HTS
isLastSegment
Bio.HTS
isNextRC
Bio.HTS
isNextUnmapped
Bio.HTS
isProperAligned
Bio.HTS
isRC
Bio.HTS
isRev
Bio.HTS
isSecondary
Bio.HTS
isSupplementary
Bio.HTS
isUnmapped
Bio.HTS
mapq
Bio.HTS
mateChr
Bio.HTS
mateChrId
Bio.HTS
mateStartLoc
Bio.HTS
quality
Bio.HTS
qualityS
Bio.HTS
queryAuxData
Bio.HTS
Queryname
Bio.HTS.Types
readLen
Bio.HTS
SAM
1 (Type/Class)
Bio.HTS.Types
2 (Data Constructor)
Bio.HTS.Types
seqName
Bio.HTS
showBamHeader
Bio.HTS.Types
showSam
Bio.HTS.Types
sinkBam
Bio.HTS
SortOrder
Bio.HTS.Types
startLoc
Bio.HTS
streamBam
Bio.HTS
tLen
Bio.HTS
unbam
Bio.HTS.Types
unbamHeader
Bio.HTS.Types
Unknown
Bio.HTS.Types
Unsorted
Bio.HTS.Types
withHTSFile
Bio.HTS.Internal
_sam_aux
Bio.HTS.Types
_sam_cigar
Bio.HTS.Types
_sam_flag
Bio.HTS.Types
_sam_mapq
Bio.HTS.Types
_sam_pnext
Bio.HTS.Types
_sam_pos
Bio.HTS.Types
_sam_qname
Bio.HTS.Types
_sam_qual
Bio.HTS.Types
_sam_rname
Bio.HTS.Types
_sam_rnext
Bio.HTS.Types
_sam_seq
Bio.HTS.Types
_sam_tlen
Bio.HTS.Types