Hackage :: [Package]

NGLess: NGLess implements ngless, a DSL for processing sequencing data

[ domain-specific-language, library, mit, program ] [ Propose Tags ]

NGLess implements a domain-specific language for processing next generation data, particularly metagenomics.

Modules

  • BuiltinFunctions
  • BuiltinModules
    • BuiltinModules.Argv
    • BuiltinModules.AsReads
    • BuiltinModules.Assemble
    • BuiltinModules.Checks
    • BuiltinModules.LoadDirectory
    • BuiltinModules.ORFFind
    • BuiltinModules.QCStats
    • BuiltinModules.Readlines
    • BuiltinModules.Remove
  • CWL
  • Citations
  • CmdArgs
  • Configuration
  • Data
    • Data.FastQ
      • Data.FastQ.Utils
    • Data.Fasta
    • Data.GFF
    • Data.Sam
  • Dependencies
    • Dependencies.Embedded
    • Dependencies.Versions
  • ExternalModules
  • FileManagement
  • FileOrStream
    • FileOrStream.Types
  • Interpret
  • Interpretation
    • Interpretation.Count
      • Interpretation.Count.RefSeqInfoVector
    • Interpretation.CountFile
    • Interpretation.FastQ
    • Interpretation.Map
    • Interpretation.Select
    • Interpretation.Substrim
    • Interpretation.Unique
    • Interpretation.Write
  • JSONScript
  • Language
  • Modules
  • NGLess
    • NGLess.NGError
    • NGLess.NGLEnvironment
  • Output
  • Parse
  • ReferenceDatabases
  • StandardModules
    • StandardModules.Batch
    • StandardModules.Example
    • Mappers
      • StandardModules.Mappers.Bwa
      • StandardModules.Mappers.Minimap2
      • StandardModules.Mappers.Soap
    • StandardModules.Minimap2
    • StandardModules.Mocat
    • StandardModules.Motus
    • StandardModules.NGLStdlib
    • StandardModules.Parallel
    • StandardModules.Samtools
    • StandardModules.Soap
  • Tokens
  • Transform
  • Types
  • Utils
    • Utils.Batch
    • Utils.Conduit
    • Utils.Debug
    • Utils.Here
    • Utils.IntGroups
    • Utils.LockFile
    • Utils.Network
    • Utils.Process
    • Utils.ProgressBar
    • Utils.Samtools
    • Utils.Suggestion
    • Utils.Utils
    • Utils.Vector
  • Validation
  • ValidationIO
  • Version

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Versions [RSS] 1.4.0, 1.4.1, 1.4.1.1, 1.4.2.0, 1.5.0
Change log ChangeLog
Dependencies aeson (>=0.9), ansi-terminal, async, atomic-write (>=0.2), base (>=4.12 && <4.16), bytestring, bytestring-lexing, bzlib-conduit, conduit (>=1.3), conduit-algorithms (>=0.0.9.0), conduit-extra (>=1.1.12), configurator, containers, convertible, data-default, deepseq (>=1.3), diagrams-core, diagrams-lib, diagrams-svg, directory, double-conversion, edit-distance (>=0.2), either, errors (>=2.1), exceptions, extra (>=1.4), file-embed (>=0.0.8), filemanip (>=0.3.6), filepath (>=1.3), hashable, hashtables, hostname, http-client, http-conduit, inline-c, inline-c-cpp, int-interval-map, MissingH (>=1.3), mtl (>=2.2), network, NGLess, optparse-applicative, parsec (>=3.1), primitive (>=0.6), process (>=1.2.3), regex, resourcet (>=1.1), safe, safeio (>=0.0.2), stm, stm-chans, stm-conduit (>=2.7), strict, tar (>=0.5), tar-conduit (>=0.3.2), template-haskell, text (>=1.2), time (>=1.5), transformers, unix, unix-compat, unliftio, unliftio-core, vector (>=0.11), vector-algorithms, yaml, zlib [details]
License MIT
Author Luis Pedro Coelho and others (see AUTHORS)
Maintainer luis@luispedro.org
Category Domain Specific Language
Home page https://github.com/ngless-toolkit/ngless#readme
Bug tracker https://github.com/ngless-toolkit/ngless/issues
Source repo head: git clone https://github.com/ngless-toolkit/ngless
Uploaded by luispedro at 2022-06-02T13:09:25Z
Distributions
Executables ngless
Downloads 290 total (22 in the last 30 days)
Rating (no votes yet) [estimated by Bayesian average]
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Status Docs not available [build log]
All reported builds failed as of 2022-06-02 [all 2 reports]