Algebra.Graph.Fold

Alga is a library for algebraic construction and manipulation of graphs in Haskell. See this paper for the motivation behind the library, the underlying theory, and implementation details.

This module defines the Fold data type -- the Boehm-Berarducci encoding of algebraic graphs, which is used for generalised graph folding and for the implementation of polymorphic graph construction and transformation algorithms. Fold is an instance of type classes defined in modules Algebra.Graph.Class and Algebra.Graph.HigherKinded.Class, which can be used for polymorphic graph construction and manipulation.

Boehm-Berarducci encoding of algebraic graphs

data Fold a

The Fold data type is the Boehm-Berarducci encoding of the core graph construction primitives empty, vertex, overlay and connect. We define a Num instance as a convenient notation for working with graphs:

0           == vertex 0
1 + 2       == overlay (vertex 1) (vertex 2)
1 * 2       == connect (vertex 1) (vertex 2)
1 + 2 * 3   == overlay (vertex 1) (connect (vertex 2) (vertex 3))
1 * (2 + 3) == connect (vertex 1) (overlay (vertex 2) (vertex 3))

The Show instance is defined using basic graph construction primitives:

show (empty     :: Fold Int) == "empty"
show (1         :: Fold Int) == "vertex 1"
show (1 + 2     :: Fold Int) == "vertices [1,2]"
show (1 * 2     :: Fold Int) == "edge 1 2"
show (1 * 2 * 3 :: Fold Int) == "edges [(1,2),(1,3),(2,3)]"
show (1 * 2 + 3 :: Fold Int) == "overlay (vertex 3) (edge 1 2)"

The Eq instance is currently implemented using the AdjacencyMap as the canonical graph representation and satisfies all axioms of algebraic graphs:

• overlay is commutative and associative:

        x + y == y + x
  x + (y + z) == (x + y) + z

• connect is associative and has empty as the identity:

    x * empty == x
    empty * x == x
  x * (y * z) == (x * y) * z

• connect distributes over overlay:

  x * (y + z) == x * y + x * z
  (x + y) * z == x * z + y * z

• connect can be decomposed:

  x * y * z == x * y + x * z + y * z

The following useful theorems can be proved from the above set of axioms.

• overlay has empty as the identity and is idempotent:

    x + empty == x
    empty + x == x
        x + x == x

• Absorption and saturation of connect:

  x * y + x + y == x * y
      x * x * x == x * x

When specifying the time and memory complexity of graph algorithms, n will denote the number of vertices in the graph, m will denote the number of edges in the graph, and s will denote the size of the corresponding graph expression. For example, if g is a Fold then n, m and s can be computed as follows:

n == vertexCount g
m == edgeCount g
s == size g

Note that size is slightly different from the length method of the Foldable type class, as the latter does not count empty leaves of the expression:

length empty           == 0
size   empty           == 1
length (vertex x)      == 1
size   (vertex x)      == 1
length (empty + empty) == 0
size   (empty + empty) == 2

The size of any graph is positive, and the difference (size g - length g) corresponds to the number of occurrences of empty in an expression g.

Converting a Fold to the corresponding AdjacencyMap takes O(s + m * log(m)) time and O(s + m) memory. This is also the complexity of the graph equality test, because it is currently implemented by converting graph expressions to canonical representations based on adjacency maps.

Instances

Monad Fold

Defined in Algebra.Graph.Fold

Methods

(>>=) :: Fold a -> (a -> Fold b) -> Fold b

(>>) :: Fold a -> Fold b -> Fold b

return :: a -> Fold a

fail :: String -> Fold a

Functor Fold

Defined in Algebra.Graph.Fold

Methods

fmap :: (a -> b) -> Fold a -> Fold b

(<$) :: a -> Fold b -> Fold a

Applicative Fold

Defined in Algebra.Graph.Fold

Methods

pure :: a -> Fold a

(<*>) :: Fold (a -> b) -> Fold a -> Fold b

liftA2 :: (a -> b -> c) -> Fold a -> Fold b -> Fold c

(*>) :: Fold a -> Fold b -> Fold b

(<*) :: Fold a -> Fold b -> Fold a

Foldable Fold

Defined in Algebra.Graph.Fold

Methods

fold :: Monoid m => Fold m -> m

foldMap :: Monoid m => (a -> m) -> Fold a -> m

foldr :: (a -> b -> b) -> b -> Fold a -> b

foldr' :: (a -> b -> b) -> b -> Fold a -> b

foldl :: (b -> a -> b) -> b -> Fold a -> b

foldl' :: (b -> a -> b) -> b -> Fold a -> b

foldr1 :: (a -> a -> a) -> Fold a -> a

foldl1 :: (a -> a -> a) -> Fold a -> a

toList :: Fold a -> [a]

null :: Fold a -> Bool

length :: Fold a -> Int

elem :: Eq a => a -> Fold a -> Bool

maximum :: Ord a => Fold a -> a

minimum :: Ord a => Fold a -> a

sum :: Num a => Fold a -> a

product :: Num a => Fold a -> a

Traversable Fold

Defined in Algebra.Graph.Fold

Methods

traverse :: Applicative f => (a -> f b) -> Fold a -> f (Fold b)

sequenceA :: Applicative f => Fold (f a) -> f (Fold a)

mapM :: Monad m => (a -> m b) -> Fold a -> m (Fold b)

sequence :: Monad m => Fold (m a) -> m (Fold a)

Alternative Fold

Defined in Algebra.Graph.Fold

Methods

empty :: Fold a

(<|>) :: Fold a -> Fold a -> Fold a

some :: Fold a -> Fold [a]

many :: Fold a -> Fold [a]

MonadPlus Fold

Defined in Algebra.Graph.Fold

Methods

mzero :: Fold a

mplus :: Fold a -> Fold a -> Fold a

Graph Fold

Defined in Algebra.Graph.HigherKinded.Class

Methods

connect :: Fold a -> Fold a -> Fold a

Ord a => Eq (Fold a)

Defined in Algebra.Graph.Fold

Methods

(==) :: Fold a -> Fold a -> Bool

(/=) :: Fold a -> Fold a -> Bool

Num a => Num (Fold a)

Defined in Algebra.Graph.Fold

Methods

(+) :: Fold a -> Fold a -> Fold a

(-) :: Fold a -> Fold a -> Fold a

(*) :: Fold a -> Fold a -> Fold a

negate :: Fold a -> Fold a

abs :: Fold a -> Fold a

signum :: Fold a -> Fold a

fromInteger :: Integer -> Fold a

(Ord a, Show a) => Show (Fold a)

Defined in Algebra.Graph.Fold

Methods

showsPrec :: Int -> Fold a -> ShowS

show :: Fold a -> String

showList :: [Fold a] -> ShowS

NFData a => NFData (Fold a)

Defined in Algebra.Graph.Fold

Methods

rnf :: Fold a -> ()

ToGraph (Fold a)

Defined in Algebra.Graph.Fold

Associated Types

type ToVertex (Fold a) :: *

Methods

toGraph :: Fold a -> Graph (ToVertex (Fold a))

foldg :: r -> (ToVertex (Fold a) -> r) -> (r -> r -> r) -> (r -> r -> r) -> Fold a -> r

isEmpty :: Fold a -> Bool

size :: Fold a -> Int

hasVertex :: ToVertex (Fold a) -> Fold a -> Bool

hasEdge :: ToVertex (Fold a) -> ToVertex (Fold a) -> Fold a -> Bool

vertexCount :: Fold a -> Int

edgeCount :: Fold a -> Int

vertexList :: Fold a -> [ToVertex (Fold a)]

edgeList :: Fold a -> [(ToVertex (Fold a), ToVertex (Fold a))]

vertexSet :: Fold a -> Set (ToVertex (Fold a))

vertexIntSet :: Fold a -> IntSet

edgeSet :: Fold a -> Set (ToVertex (Fold a), ToVertex (Fold a))

preSet :: ToVertex (Fold a) -> Fold a -> Set (ToVertex (Fold a))

preIntSet :: Int -> Fold a -> IntSet

postSet :: ToVertex (Fold a) -> Fold a -> Set (ToVertex (Fold a))

postIntSet :: Int -> Fold a -> IntSet

adjacencyList :: Fold a -> [(ToVertex (Fold a), [ToVertex (Fold a)])]

adjacencyMap :: Fold a -> Map (ToVertex (Fold a)) (Set (ToVertex (Fold a)))

adjacencyIntMap :: Fold a -> IntMap IntSet

adjacencyMapTranspose :: Fold a -> Map (ToVertex (Fold a)) (Set (ToVertex (Fold a)))

adjacencyIntMapTranspose :: Fold a -> IntMap IntSet

dfsForest :: Fold a -> Forest (ToVertex (Fold a))

dfsForestFrom :: [ToVertex (Fold a)] -> Fold a -> Forest (ToVertex (Fold a))

dfs :: [ToVertex (Fold a)] -> Fold a -> [ToVertex (Fold a)]

reachable :: ToVertex (Fold a) -> Fold a -> [ToVertex (Fold a)]

topSort :: Fold a -> Maybe [ToVertex (Fold a)]

isAcyclic :: Fold a -> Bool

toAdjacencyMap :: Fold a -> AdjacencyMap (ToVertex (Fold a))

toAdjacencyMapTranspose :: Fold a -> AdjacencyMap (ToVertex (Fold a))

toAdjacencyIntMap :: Fold a -> AdjacencyIntMap

toAdjacencyIntMapTranspose :: Fold a -> AdjacencyIntMap

isDfsForestOf :: Forest (ToVertex (Fold a)) -> Fold a -> Bool

isTopSortOf :: [ToVertex (Fold a)] -> Fold a -> Bool

Graph (Fold a)

Defined in Algebra.Graph.Class

Associated Types

type Vertex (Fold a) :: *

Methods

empty :: Fold a

vertex :: Vertex (Fold a) -> Fold a

overlay :: Fold a -> Fold a -> Fold a

connect :: Fold a -> Fold a -> Fold a

type ToVertex (Fold a)

Defined in Algebra.Graph.Fold

type ToVertex (Fold a) = a

type Vertex (Fold a)

Defined in Algebra.Graph.Class

type Vertex (Fold a) = a

Basic graph construction primitives

empty :: Fold a

Construct the empty graph. Complexity: O(1) time, memory and size.

isEmpty     empty == True
hasVertex x empty == False
vertexCount empty == 0
edgeCount   empty == 0
size        empty == 1

vertex :: a -> Fold a

Construct the graph comprising a single isolated vertex. Complexity: O(1) time, memory and size.

isEmpty     (vertex x) == False
hasVertex x (vertex x) == True
vertexCount (vertex x) == 1
edgeCount   (vertex x) == 0
size        (vertex x) == 1

edge :: a -> a -> Fold a

Construct the graph comprising a single edge. Complexity: O(1) time, memory and size.

edge x y               == connect (vertex x) (vertex y)
hasEdge x y (edge x y) == True
edgeCount   (edge x y) == 1
vertexCount (edge 1 1) == 1
vertexCount (edge 1 2) == 2

overlay :: Fold a -> Fold a -> Fold a

Overlay two graphs. This is a commutative, associative and idempotent operation with the identity empty. Complexity: O(1) time and memory, O(s1 + s2) size.

isEmpty     (overlay x y) == isEmpty   x   && isEmpty   y
hasVertex z (overlay x y) == hasVertex z x || hasVertex z y
vertexCount (overlay x y) >= vertexCount x
vertexCount (overlay x y) <= vertexCount x + vertexCount y
edgeCount   (overlay x y) >= edgeCount x
edgeCount   (overlay x y) <= edgeCount x   + edgeCount y
size        (overlay x y) == size x        + size y
vertexCount (overlay 1 2) == 2
edgeCount   (overlay 1 2) == 0

connect :: Fold a -> Fold a -> Fold a

Connect two graphs. This is an associative operation with the identity empty, which distributes over overlay and obeys the decomposition axiom. Complexity: O(1) time and memory, O(s1 + s2) size. Note that the number of edges in the resulting graph is quadratic with respect to the number of vertices of the arguments: m = O(m1 + m2 + n1 * n2).

isEmpty     (connect x y) == isEmpty   x   && isEmpty   y
hasVertex z (connect x y) == hasVertex z x || hasVertex z y
vertexCount (connect x y) >= vertexCount x
vertexCount (connect x y) <= vertexCount x + vertexCount y
edgeCount   (connect x y) >= edgeCount x
edgeCount   (connect x y) >= edgeCount y
edgeCount   (connect x y) >= vertexCount x * vertexCount y
edgeCount   (connect x y) <= vertexCount x * vertexCount y + edgeCount x + edgeCount y
size        (connect x y) == size x        + size y
vertexCount (connect 1 2) == 2
edgeCount   (connect 1 2) == 1

vertices :: [a] -> Fold a

Construct the graph comprising a given list of isolated vertices. Complexity: O(L) time, memory and size, where L is the length of the given list.

vertices []            == empty
vertices [x]           == vertex x
hasVertex x . vertices == elem x
vertexCount . vertices == length . nub
vertexSet   . vertices == Set.fromList

edges :: [(a, a)] -> Fold a

Construct the graph from a list of edges. Complexity: O(L) time, memory and size, where L is the length of the given list.

edges []          == empty
edges [(x,y)]     == edge x y
edgeCount . edges == length . nub

overlays :: [Fold a] -> Fold a

Overlay a given list of graphs. Complexity: O(L) time and memory, and O(S) size, where L is the length of the given list, and S is the sum of sizes of the graphs in the list.

overlays []        == empty
overlays [x]       == x
overlays [x,y]     == overlay x y
overlays           == foldr overlay empty
isEmpty . overlays == all isEmpty

connects :: [Fold a] -> Fold a

Connect a given list of graphs. Complexity: O(L) time and memory, and O(S) size, where L is the length of the given list, and S is the sum of sizes of the graphs in the list.

connects []        == empty
connects [x]       == x
connects [x,y]     == connect x y
connects           == foldr connect empty
isEmpty . connects == all isEmpty

Graph folding

foldg :: b -> (a -> b) -> (b -> b -> b) -> (b -> b -> b) -> Fold a -> b

Generalised Graph folding: recursively collapse a Graph by applying the provided functions to the leaves and internal nodes of the expression. The order of arguments is: empty, vertex, overlay and connect. Complexity: O(s) applications of given functions. As an example, the complexity of size is O(s), since all functions have cost O(1).

foldg empty vertex        overlay connect        == id
foldg empty vertex        overlay (flip connect) == transpose
foldg []    return        (++)    (++)           == toList
foldg 0     (const 1)     (+)     (+)            == length
foldg 1     (const 1)     (+)     (+)            == size
foldg True  (const False) (&&)    (&&)           == isEmpty

Relations on graphs

isSubgraphOf :: Ord a => Fold a -> Fold a -> Bool

The isSubgraphOf function takes two graphs and returns True if the first graph is a subgraph of the second. Complexity: O(s + m * log(m)) time. Note that the number of edges m of a graph can be quadratic with respect to the expression size s.

isSubgraphOf empty         x             == True
isSubgraphOf (vertex x)    empty         == False
isSubgraphOf x             (overlay x y) == True
isSubgraphOf (overlay x y) (connect x y) == True
isSubgraphOf (path xs)     (circuit xs)  == True

Graph properties

isEmpty :: Fold a -> Bool

Check if a graph is empty. A convenient alias for null. Complexity: O(s) time.

isEmpty empty                       == True
isEmpty (overlay empty empty)       == True
isEmpty (vertex x)                  == False
isEmpty (removeVertex x $ vertex x) == True
isEmpty (removeEdge x y $ edge x y) == False

size :: Fold a -> Int

The size of a graph, i.e. the number of leaves of the expression including empty leaves. Complexity: O(s) time.

size empty         == 1
size (vertex x)    == 1
size (overlay x y) == size x + size y
size (connect x y) == size x + size y
size x             >= 1
size x             >= vertexCount x

hasVertex :: Eq a => a -> Fold a -> Bool

Check if a graph contains a given vertex. A convenient alias for elem. Complexity: O(s) time.

hasVertex x empty            == False
hasVertex x (vertex x)       == True
hasVertex 1 (vertex 2)       == False
hasVertex x . removeVertex x == const False

hasEdge :: Eq a => a -> a -> Fold a -> Bool

Check if a graph contains a given edge. Complexity: O(s) time.

hasEdge x y empty            == False
hasEdge x y (vertex z)       == False
hasEdge x y (edge x y)       == True
hasEdge x y . removeEdge x y == const False
hasEdge x y                  == elem (x,y) . edgeList

vertexCount :: Ord a => Fold a -> Int

The number of vertices in a graph. Complexity: O(s * log(n)) time.

vertexCount empty      == 0
vertexCount (vertex x) == 1
vertexCount            == length . vertexList

edgeCount :: Ord a => Fold a -> Int

The number of edges in a graph. Complexity: O(s + m * log(m)) time. Note that the number of edges m of a graph can be quadratic with respect to the expression size s.

edgeCount empty      == 0
edgeCount (vertex x) == 0
edgeCount (edge x y) == 1
edgeCount            == length . edgeList

vertexList :: Ord a => Fold a -> [a]

The sorted list of vertices of a given graph. Complexity: O(s * log(n)) time and O(n) memory.

vertexList empty      == []
vertexList (vertex x) == [x]
vertexList . vertices == nub . sort

edgeList :: Ord a => Fold a -> [(a, a)]

The sorted list of edges of a graph. Complexity: O(s + m * log(m)) time and O(m) memory. Note that the number of edges m of a graph can be quadratic with respect to the expression size s.

edgeList empty          == []
edgeList (vertex x)     == []
edgeList (edge x y)     == [(x,y)]
edgeList (star 2 [3,1]) == [(2,1), (2,3)]
edgeList . edges        == nub . sort
edgeList . transpose    == sort . map swap . edgeList

vertexSet :: Ord a => Fold a -> Set a

The set of vertices of a given graph. Complexity: O(s * log(n)) time and O(n) memory.

vertexSet empty      == Set.empty
vertexSet . vertex   == Set.singleton
vertexSet . vertices == Set.fromList
vertexSet . clique   == Set.fromList

vertexIntSet :: Fold Int -> IntSet

The set of vertices of a given graph. Like vertexSet but specialised for graphs with vertices of type Int. Complexity: O(s * log(n)) time and O(n) memory.

vertexIntSet empty      == IntSet.empty
vertexIntSet . vertex   == IntSet.singleton
vertexIntSet . vertices == IntSet.fromList
vertexIntSet . clique   == IntSet.fromList

edgeSet :: Ord a => Fold a -> Set (a, a)

The set of edges of a given graph. Complexity: O(s * log(m)) time and O(m) memory.

edgeSet empty      == Set.empty
edgeSet (vertex x) == Set.empty
edgeSet (edge x y) == Set.singleton (x,y)
edgeSet . edges    == Set.fromList

adjacencyList :: Ord a => Fold a -> [(a, [a])]

The sorted adjacency list of a graph. Complexity: O(s + m * log(m)) time. Note that the number of edges m of a graph can be quadratic with respect to the expression size s.

adjacencyList empty          == []
adjacencyList (vertex x)     == [(x, [])]
adjacencyList (edge 1 2)     == [(1, [2]), (2, [])]
adjacencyList (star 2 [3,1]) == [(1, []), (2, [1,3]), (3, [])]
stars . adjacencyList        == id

Standard families of graphs

path :: [a] -> Fold a

The path on a list of vertices. Complexity: O(L) time, memory and size, where L is the length of the given list.

path []        == empty
path [x]       == vertex x
path [x,y]     == edge x y
path . reverse == transpose . path

circuit :: [a] -> Fold a

The circuit on a list of vertices. Complexity: O(L) time, memory and size, where L is the length of the given list.

circuit []        == empty
circuit [x]       == edge x x
circuit [x,y]     == edges [(x,y), (y,x)]
circuit . reverse == transpose . circuit

clique :: [a] -> Fold a

The clique on a list of vertices. Complexity: O(L) time, memory and size, where L is the length of the given list.

clique []         == empty
clique [x]        == vertex x
clique [x,y]      == edge x y
clique [x,y,z]    == edges [(x,y), (x,z), (y,z)]
clique (xs ++ ys) == connect (clique xs) (clique ys)
clique . reverse  == transpose . clique

biclique :: [a] -> [a] -> Fold a

The biclique on two lists of vertices. Complexity: O(L1 + L2) time, memory and size, where L1 and L2 are the lengths of the given lists.

biclique []      []      == empty
biclique [x]     []      == vertex x
biclique []      [y]     == vertex y
biclique [x1,x2] [y1,y2] == edges [(x1,y1), (x1,y2), (x2,y1), (x2,y2)]
biclique xs      ys      == connect (vertices xs) (vertices ys)

star :: a -> [a] -> Fold a

The star formed by a centre vertex connected to a list of leaves. Complexity: O(L) time, memory and size, where L is the length of the given list.

star x []    == vertex x
star x [y]   == edge x y
star x [y,z] == edges [(x,y), (x,z)]
star x ys    == connect (vertex x) (vertices ys)

stars :: [(a, [a])] -> Fold a

The stars formed by overlaying a list of stars. An inverse of adjacencyList. Complexity: O(L) time, memory and size, where L is the total size of the input.

stars []                      == empty
stars [(x, [])]               == vertex x
stars [(x, [y])]              == edge x y
stars [(x, ys)]               == star x ys
stars                         == overlays . map (uncurry star)
stars . adjacencyList         == id
overlay (stars xs) (stars ys) == stars (xs ++ ys)

Graph transformation

removeVertex :: Eq a => a -> Fold a -> Fold a

Remove a vertex from a given graph. Complexity: O(s) time, memory and size.

removeVertex x (vertex x)       == empty
removeVertex 1 (vertex 2)       == vertex 2
removeVertex x (edge x x)       == empty
removeVertex 1 (edge 1 2)       == vertex 2
removeVertex x . removeVertex x == removeVertex x

removeEdge :: Eq a => a -> a -> Fold a -> Fold a

Remove an edge from a given graph. Complexity: O(s) time, memory and size.

removeEdge x y (edge x y)       == vertices [x,y]
removeEdge x y . removeEdge x y == removeEdge x y
removeEdge x y . removeVertex x == removeVertex x
removeEdge 1 1 (1 * 1 * 2 * 2)  == 1 * 2 * 2
removeEdge 1 2 (1 * 1 * 2 * 2)  == 1 * 1 + 2 * 2
size (removeEdge x y z)         <= 3 * size z

transpose :: Fold a -> Fold a

Transpose a given graph. Complexity: O(s) time, memory and size.

transpose empty       == empty
transpose (vertex x)  == vertex x
transpose (edge x y)  == edge y x
transpose . transpose == id
transpose (box x y)   == box (transpose x) (transpose y)
edgeList . transpose  == sort . map swap . edgeList

induce :: (a -> Bool) -> Fold a -> Fold a

Construct the induced subgraph of a given graph by removing the vertices that do not satisfy a given predicate. Complexity: O(s) time, memory and size, assuming that the predicate takes O(1) to be evaluated.

induce (const True ) x      == x
induce (const False) x      == empty
induce (/= x)               == removeVertex x
induce p . induce q         == induce (\x -> p x && q x)
isSubgraphOf (induce p x) x == True

simplify :: Ord a => Fold a -> Fold a

Simplify a graph expression. Semantically, this is the identity function, but it simplifies a given polymorphic graph expression according to the laws of the algebra. The function does not compute the simplest possible expression, but uses heuristics to obtain useful simplifications in reasonable time. Complexity: the function performs O(s) graph comparisons. It is guaranteed that the size of the result does not exceed the size of the given expression. Below the operator ~> denotes the is simplified to relation.

simplify             == id
size (simplify x)    <= size x
simplify empty       ~> empty
simplify 1           ~> 1
simplify (1 + 1)     ~> 1
simplify (1 + 2 + 1) ~> 1 + 2
simplify (1 * 1 * 1) ~> 1 * 1