bioinformatics-toolkit-0.8.0: A collection of bioinformatics tools

Safe Haskell	None
Language	Haskell2010

Bio.GO.Parser

Synopsis

readOWL :: FilePath -> IO [GO]
readOWLAsMap :: FilePath -> IO GOMap
data GAF = GAF {
- gafDb :: ByteString
- gafDbId :: ByteString
- gafSymbol :: CI ByteString
- gafQualifier :: Maybe [ByteString]
- gafGoId :: GOId
- gafDbRef :: [ByteString]
- gafEvidenceCode :: ByteString
- gafWithOrFrom :: Maybe [ByteString]
- gafAspect :: ByteString
- gafName :: Maybe ByteString
- gafSynonym :: Maybe [ByteString]
- gafType :: ByteString
- gafTaxon :: [ByteString]
- gafDate :: ByteString
- gafAssignedBy :: ByteString
- gafAnnotationExtension :: Maybe [ByteString]
- gafGeneProductID :: Maybe ByteString
}
readGAF :: FilePath -> ConduitT i GAF (ResourceT IO) ()

Documentation

readOWL :: FilePath -> IO [GO] Source #

readOWLAsMap :: FilePath -> IO GOMap Source #

data GAF Source #

Constructors

Fields

gafDb :: ByteString
gafDbId :: ByteString
gafSymbol :: CI ByteString
gafQualifier :: Maybe [ByteString]
gafGoId :: GOId
gafDbRef :: [ByteString]
gafEvidenceCode :: ByteString
gafWithOrFrom :: Maybe [ByteString]
gafAspect :: ByteString
gafName :: Maybe ByteString
gafSynonym :: Maybe [ByteString]
gafType :: ByteString
gafTaxon :: [ByteString]
gafDate :: ByteString
gafAssignedBy :: ByteString
gafAnnotationExtension :: Maybe [ByteString]
gafGeneProductID :: Maybe ByteString

Instances

Eq GAF Source #
Instance details Defined in Bio.GO.Parser Methods (==) :: GAF -> GAF -> Bool # (/=) :: GAF -> GAF -> Bool #
Ord GAF Source #
Instance details Defined in Bio.GO.Parser Methods compare :: GAF -> GAF -> Ordering # (<) :: GAF -> GAF -> Bool # (<=) :: GAF -> GAF -> Bool # (>) :: GAF -> GAF -> Bool # (>=) :: GAF -> GAF -> Bool # max :: GAF -> GAF -> GAF # min :: GAF -> GAF -> GAF #
Show GAF Source #
Instance details Defined in Bio.GO.Parser Methods showsPrec :: Int -> GAF -> ShowS # show :: GAF -> String # showList :: [GAF] -> ShowS #

readGAF :: FilePath -> ConduitT i GAF (ResourceT IO) () Source #

GO Annotation File (GAF) Format 2.1 Parser. For details read: http://geneontology.org/page/go-annotation-file-gaf-format-21.