| AA | Bio.Protein.AminoAcid.Type, Bio.Protein.AminoAcid |
| AffineGap | |
| 1 (Type/Class) | Bio.Chain.Alignment.Type, Bio.Chain.Alignment |
| 2 (Data Constructor) | Bio.Chain.Alignment.Type, Bio.Chain.Alignment |
| AffineGap2 | Bio.Chain.Alignment.Type, Bio.Chain.Alignment |
| AffineTransformable | Bio.Utils.Geometry |
| ALA | Bio.Protein.AminoAcid.Type, Bio.Protein.AminoAcid |
| Alanine | Bio.Protein.AminoAcid.Type, Bio.Protein.AminoAcid |
| align | Bio.Chain.Alignment |
| Alignable | Bio.Chain.Alignment.Type |
| alignment | Bio.Chain.Alignment.Type, Bio.Chain.Alignment |
| AlignmentResult | |
| 1 (Type/Class) | Bio.Chain.Alignment.Type, Bio.Chain.Alignment |
| 2 (Data Constructor) | Bio.Chain.Alignment.Type, Bio.Chain.Alignment |
| AminoAcid | |
| 1 (Type/Class) | Bio.Protein.AminoAcid.Type, Bio.Protein.AminoAcid |
| 2 (Data Constructor) | Bio.Protein.AminoAcid.Type, Bio.Protein.AminoAcid |
| angle | |
| 1 (Function) | Bio.Utils.Geometry |
| 2 (Function) | Bio.Protein.Metric |
| ARG | Bio.Protein.AminoAcid.Type, Bio.Protein.AminoAcid |
| Arginine | Bio.Protein.AminoAcid.Type, Bio.Protein.AminoAcid |
| ASN | Bio.Protein.AminoAcid.Type, Bio.Protein.AminoAcid |
| ASP | Bio.Protein.AminoAcid.Type, Bio.Protein.AminoAcid |
| Asparagine | Bio.Protein.AminoAcid.Type, Bio.Protein.AminoAcid |
| AsparticAcid | Bio.Protein.AminoAcid.Type, Bio.Protein.AminoAcid |
| assocs | Bio.Chain, Bio.Protein.Chain |
| atom | Bio.Protein.AminoAcid.Instances, Bio.Protein.AminoAcid |
| atom' | Bio.Protein.AminoAcid.Type, Bio.Protein.AminoAcid |
| AtomType | Bio.Utils.IUPAC |