Bio.NucleicAcid.Nucleotide.Type

Documentation

data DNA

Constructors

DA

DC

DG

DT

Instances

Bounded DNA

Defined in Bio.NucleicAcid.Nucleotide.Type

Methods

minBound :: DNA

maxBound :: DNA

Enum DNA

Defined in Bio.NucleicAcid.Nucleotide.Type

Methods

succ :: DNA -> DNA

pred :: DNA -> DNA

toEnum :: Int -> DNA

fromEnum :: DNA -> Int

enumFrom :: DNA -> [DNA]

enumFromThen :: DNA -> DNA -> [DNA]

enumFromTo :: DNA -> DNA -> [DNA]

enumFromThenTo :: DNA -> DNA -> DNA -> [DNA]

Generic DNA

Defined in Bio.NucleicAcid.Nucleotide.Type

Associated Types

type Rep DNA :: Type -> Type

Methods

from :: DNA -> Rep DNA x

to :: Rep DNA x -> DNA

Show DNA

Defined in Bio.NucleicAcid.Nucleotide.Type

Methods

showsPrec :: Int -> DNA -> ShowS

show :: DNA -> String

showList :: [DNA] -> ShowS

Complementary DNA

Defined in Bio.NucleicAcid.Nucleotide.Type

Methods

cNA :: DNA -> DNA

rcNA :: DNA -> DNA

FromSymbol DNA

Defined in Bio.NucleicAcid.Nucleotide.Instances

Methods

fromSymbol :: Char -> Maybe DNA

fromSymbolE :: Char -> Either Char DNA

Symbol DNA

Defined in Bio.NucleicAcid.Nucleotide.Instances

Methods

symbol :: DNA -> Char

NFData DNA

Defined in Bio.NucleicAcid.Nucleotide.Type

Methods

rnf :: DNA -> ()

Eq DNA

Defined in Bio.NucleicAcid.Nucleotide.Type

Methods

(==) :: DNA -> DNA -> Bool

(/=) :: DNA -> DNA -> Bool

Ord DNA

Defined in Bio.NucleicAcid.Nucleotide.Type

Methods

compare :: DNA -> DNA -> Ordering

(<) :: DNA -> DNA -> Bool

(<=) :: DNA -> DNA -> Bool

(>) :: DNA -> DNA -> Bool

(>=) :: DNA -> DNA -> Bool

max :: DNA -> DNA -> DNA

min :: DNA -> DNA -> DNA

IsString [DNA]

Defined in Bio.NucleicAcid.Nucleotide.Instances

Methods

fromString :: String -> [DNA]

IsString (Array Int DNA)

Defined in Bio.NucleicAcid.Nucleotide.Instances

Methods

fromString :: String -> Array Int DNA

IsString (NucleicAcidChain Int DNA)

Defined in Bio.NucleicAcid.Chain

Methods

fromString :: String -> NucleicAcidChain Int DNA

type Rep DNA

Defined in Bio.NucleicAcid.Nucleotide.Type

type Rep DNA = D1 ('MetaData "DNA" "Bio.NucleicAcid.Nucleotide.Type" "cobot-0.1.1.8-Giff50E8qZ73qQvm66bZ3u" 'False) ((C1 ('MetaCons "DA" 'PrefixI 'False) (U1 :: Type -> Type) :+: C1 ('MetaCons "DC" 'PrefixI 'False) (U1 :: Type -> Type)) :+: (C1 ('MetaCons "DG" 'PrefixI 'False) (U1 :: Type -> Type) :+: C1 ('MetaCons "DT" 'PrefixI 'False) (U1 :: Type -> Type)))

data RNA

Constructors

RA

RC

RG

RU

Instances

Bounded RNA

Defined in Bio.NucleicAcid.Nucleotide.Type

Methods

minBound :: RNA

maxBound :: RNA

Enum RNA

Defined in Bio.NucleicAcid.Nucleotide.Type

Methods

succ :: RNA -> RNA

pred :: RNA -> RNA

toEnum :: Int -> RNA

fromEnum :: RNA -> Int

enumFrom :: RNA -> [RNA]

enumFromThen :: RNA -> RNA -> [RNA]

enumFromTo :: RNA -> RNA -> [RNA]

enumFromThenTo :: RNA -> RNA -> RNA -> [RNA]

Generic RNA

Defined in Bio.NucleicAcid.Nucleotide.Type

Associated Types

type Rep RNA :: Type -> Type

Methods

from :: RNA -> Rep RNA x

to :: Rep RNA x -> RNA

Show RNA

Defined in Bio.NucleicAcid.Nucleotide.Type

Methods

showsPrec :: Int -> RNA -> ShowS

show :: RNA -> String

showList :: [RNA] -> ShowS

Complementary RNA

Defined in Bio.NucleicAcid.Nucleotide.Type

Methods

cNA :: RNA -> RNA

rcNA :: RNA -> RNA

FromSymbol RNA

Defined in Bio.NucleicAcid.Nucleotide.Instances

Methods

fromSymbol :: Char -> Maybe RNA

fromSymbolE :: Char -> Either Char RNA

Symbol RNA

Defined in Bio.NucleicAcid.Nucleotide.Instances

Methods

symbol :: RNA -> Char

NFData RNA

Defined in Bio.NucleicAcid.Nucleotide.Type

Methods

rnf :: RNA -> ()

Eq RNA

Defined in Bio.NucleicAcid.Nucleotide.Type

Methods

(==) :: RNA -> RNA -> Bool

(/=) :: RNA -> RNA -> Bool

Ord RNA

Defined in Bio.NucleicAcid.Nucleotide.Type

Methods

compare :: RNA -> RNA -> Ordering

(<) :: RNA -> RNA -> Bool

(<=) :: RNA -> RNA -> Bool

(>) :: RNA -> RNA -> Bool

(>=) :: RNA -> RNA -> Bool

max :: RNA -> RNA -> RNA

min :: RNA -> RNA -> RNA

IsString [RNA]

Defined in Bio.NucleicAcid.Nucleotide.Instances

Methods

fromString :: String -> [RNA]

IsString (Array Int RNA)

Defined in Bio.NucleicAcid.Nucleotide.Instances

Methods

fromString :: String -> Array Int RNA

IsString (NucleicAcidChain Int RNA)

Defined in Bio.NucleicAcid.Chain

Methods

fromString :: String -> NucleicAcidChain Int RNA

type Rep RNA

Defined in Bio.NucleicAcid.Nucleotide.Type

type Rep RNA = D1 ('MetaData "RNA" "Bio.NucleicAcid.Nucleotide.Type" "cobot-0.1.1.8-Giff50E8qZ73qQvm66bZ3u" 'False) ((C1 ('MetaCons "RA" 'PrefixI 'False) (U1 :: Type -> Type) :+: C1 ('MetaCons "RC" 'PrefixI 'False) (U1 :: Type -> Type)) :+: (C1 ('MetaCons "RG" 'PrefixI 'False) (U1 :: Type -> Type) :+: C1 ('MetaCons "RU" 'PrefixI 'False) (U1 :: Type -> Type)))

nucleoIso :: Iso' DNA RNA

toRNA :: DNA -> RNA

toDNA :: RNA -> DNA

class Complementary a where

Methods

cNA :: a -> a

complement *NA (DNA or RNA)

rcNA :: a -> a

reverce complement *NA (DNA or RNA)

Instances

Complementary DNA

Defined in Bio.NucleicAcid.Nucleotide.Type

Methods

cNA :: DNA -> DNA

rcNA :: DNA -> DNA

Complementary RNA

Defined in Bio.NucleicAcid.Nucleotide.Type

Methods

cNA :: RNA -> RNA

rcNA :: RNA -> RNA

Complementary Char

Defined in Bio.NucleicAcid.Nucleotide.Type

Methods

cNA :: Char -> Char

rcNA :: Char -> Char

Complementary a => Complementary [a]

Defined in Bio.NucleicAcid.Nucleotide.Type

Methods

cNA :: [a] -> [a]

rcNA :: [a] -> [a]

Complementary a => Complementary (Array Int a)

Defined in Bio.NucleicAcid.Nucleotide.Type

Methods

cNA :: Array Int a -> Array Int a

rcNA :: Array Int a -> Array Int a

(Complementary a, Ix i) => Complementary (Array i a)

Defined in Bio.NucleicAcid.Nucleotide.Type

Methods

cNA :: Array i a -> Array i a

rcNA :: Array i a -> Array i a