Bio.Utils.Monomer

Documentation

class Symbol a where

Methods

symbol :: a -> Char

Instances

Symbol DNA

Defined in Bio.NucleicAcid.Nucleotide.Instances

Methods

symbol :: DNA -> Char

Symbol RNA

Defined in Bio.NucleicAcid.Nucleotide.Instances

Methods

symbol :: RNA -> Char

Symbol AA

Symbol encoding

Defined in Bio.Protein.AminoAcid.Instances

Methods

symbol :: AA -> Char

Symbol Char

Defined in Bio.Utils.Monomer

Methods

symbol :: Char -> Char

(Functor nr, HasRadicalType car, Functor cr) => Symbol (AminoAcid nr (Env car) cr a)

Lens to get Symbol from every suitable amino acid

Defined in Bio.Protein.AminoAcid.Instances

Methods

symbol :: AminoAcid nr (Env car) cr a -> Char

class FromSymbol a where

Minimal complete definition

Nothing

Methods

fromSymbol :: Char -> Maybe a

fromSymbolE :: Char -> Either Char a

Instances

FromSymbol DNA

Defined in Bio.NucleicAcid.Nucleotide.Instances

Methods

fromSymbol :: Char -> Maybe DNA

fromSymbolE :: Char -> Either Char DNA

FromSymbol RNA

Defined in Bio.NucleicAcid.Nucleotide.Instances

Methods

fromSymbol :: Char -> Maybe RNA

fromSymbolE :: Char -> Either Char RNA

FromSymbol AA

Parse symbol encoding

Defined in Bio.Protein.AminoAcid.Instances

Methods

fromSymbol :: Char -> Maybe AA

fromSymbolE :: Char -> Either Char AA

FromSymbol Char

Defined in Bio.Utils.Monomer

Methods

fromSymbol :: Char -> Maybe Char

fromSymbolE :: Char -> Either Char Char

class ThreeSymbols a where

Methods

threeSymbols :: a -> Text

Instances

ThreeSymbols AA

Three symbols encoding

Defined in Bio.Protein.AminoAcid.Instances

Methods

threeSymbols :: AA -> Text

class FromThreeSymbols a where

Methods

fromThreeSymbols :: Text -> Maybe a

Instances

FromThreeSymbols AA

Parse three symbols encoding

Defined in Bio.Protein.AminoAcid.Instances

Methods

fromThreeSymbols :: Text -> Maybe AA