bio-0.5.3: A bioinformatics library

Safe Haskell	None

Bio.GFF3.FeatureHierSequences

Documentation

data FeatureHierSequences Source

Instances

Show FeatureHierSequences

features :: FeatureHierSequences -> Set Feature Source

sequences :: FeatureHierSequences -> [Sequence a]Source

fromLists :: (Error e, MonadError e m) => [Feature] -> [Sequence a] -> m FeatureHierSequences Source

parse :: (Error e, MonadError e m) => ByteString -> m FeatureHierSequences Source

lookupId :: (Error e, MonadError e m) => FeatureHierSequences -> SeqName -> m Feature Source

parents :: FeatureHierSequences -> Feature -> [Feature]Source

children :: FeatureHierSequences -> Feature -> [Feature]Source

seqData :: (Error e, MonadError e m) => FeatureHierSequences -> SeqLoc -> m SeqData Source

getSequence :: (Error e, MonadError e m) => FeatureHierSequences -> SeqName -> m SeqData Source

featureSequence :: (Error e, MonadError e m) => FeatureHierSequences -> Feature -> m (Sequence a)Source

runGFF :: FilePath -> ErrorT String (Reader FeatureHierSequences) a -> ErrorT String IO aSource

runGFFIO :: FilePath -> ErrorT String (ReaderT FeatureHierSequences IO) a -> ErrorT String IO aSource

asksGFF :: (Error e, MonadError e m, MonadReader FeatureHierSequences m) => (FeatureHierSequences -> a -> m b) -> a -> m bSource