Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT

WARNING

This module is considered internal.

The Package Versioning Policy does not apply.

The contents of this module may change in any way whatsoever and without any warning between minor versions of this package.

Authors importing this library are expected to track development closely.

All credit goes to the author(s)/maintainer(s) of the containers library for the above warning text.

Description

This library enables the decoding/encoding of SAM, BAM and CRAM file formats.

SAM version 1.6 alignment optional fields data type

data BAM_V1_6_BAM_Alignment_OptionalFields_BOPT

Custom BAM (version 1.6) BAM_V1_6_BAM_Alignment_OptionalFields_BOPT data type.

See section 4.2 of the SAM v1.6 specification documentation.

Constructors

BAM_V1_6_BAM_Alignment_OptionalFields_BOPT

Fields

• bam_v1_6_bam_alignment_optionalfields_bopt_int8 :: Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8
• bam_v1_6_bam_alignment_optionalfields_bopt_word8 :: Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8
• bam_v1_6_bam_alignment_optionalfields_bopt_int16 :: Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16
• bam_v1_6_bam_alignment_optionalfields_bopt_word16 :: Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16
• bam_v1_6_bam_alignment_optionalfields_bopt_int32 :: Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32
• bam_v1_6_bam_alignment_optionalfields_bopt_word32 :: Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32
• bam_v1_6_bam_alignment_optionalfields_bopt_float :: Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float

Instances

Generic BAM_V1_6_BAM_Alignment_OptionalFields_BOPT

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT

Associated Types

type Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT :: Type -> Type

Methods

from :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT -> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT x

to :: Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT x -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT

Show BAM_V1_6_BAM_Alignment_OptionalFields_BOPT

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT

Methods

showsPrec :: Int -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT -> ShowS

show :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT -> String

showList :: [BAM_V1_6_BAM_Alignment_OptionalFields_BOPT] -> ShowS

Eq BAM_V1_6_BAM_Alignment_OptionalFields_BOPT

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT

Methods

(==) :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT -> Bool

(/=) :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT -> Bool

type Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT

type Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT = D1 ('MetaData "BAM_V1_6_BAM_Alignment_OptionalFields_BOPT" "Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT" "hs-samtools-0.10.0.3-inplace" 'False) (C1 ('MetaCons "BAM_V1_6_BAM_Alignment_OptionalFields_BOPT" 'PrefixI 'True) ((S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_bopt_int8") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8)) :*: (S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_bopt_word8") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8)) :*: S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_bopt_int16") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16)))) :*: ((S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_bopt_word16") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16)) :*: S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_bopt_int32") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32))) :*: (S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_bopt_word32") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32)) :*: S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_bopt_float") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Maybe BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float))))))

data BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8

cCsSiIf of the last optional field (type B).

See section 4.2 of the SAM v1.6 specification documentation.

Constructors

BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8

Fields

• bam_v1_6_bam_alignment_optionalfields_bopt_int8_tag :: ByteString
• bam_v1_6_bam_alignment_optionalfields_bopt_int8_type :: ByteString
• bam_v1_6_bam_alignment_optionalfields_bopt_int8_count :: Word32
• bam_v1_6_bam_alignment_optionalfields_bopt_int8_value :: Seq Int8

Instances

Generic BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT

Associated Types

type Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8 :: Type -> Type

Methods

from :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8 -> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8 x

to :: Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8 x -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8

Show BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT

Methods

showsPrec :: Int -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8 -> ShowS

show :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8 -> String

showList :: [BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8] -> ShowS

Eq BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT

Methods

(==) :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8 -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8 -> Bool

(/=) :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8 -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8 -> Bool

type Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT

type Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8 = D1 ('MetaData "BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8" "Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT" "hs-samtools-0.10.0.3-inplace" 'False) (C1 ('MetaCons "BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int8" 'PrefixI 'True) ((S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_bopt_int8_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 ByteString) :*: S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_bopt_int8_type") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 ByteString)) :*: (S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_bopt_int8_count") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 Word32) :*: S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_bopt_int8_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Seq Int8)))))

data BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8

cCsSiIf of the last optional field (type B).

See section 4.2 of the SAM v1.6 specification documentation.

Constructors

BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8

Fields

• bam_v1_6_bam_alignment_optionalfields_bopt_word8_tag :: ByteString
• bam_v1_6_bam_alignment_optionalfields_bopt_word8_type :: ByteString
• bam_v1_6_bam_alignment_optionalfields_bopt_word8_count :: Word32
• bam_v1_6_bam_alignment_optionalfields_bopt_word8_value :: Seq Word8

Instances

Generic BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT

Associated Types

type Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8 :: Type -> Type

Methods

from :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8 -> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8 x

to :: Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8 x -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8

Show BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT

Methods

showsPrec :: Int -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8 -> ShowS

show :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8 -> String

showList :: [BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8] -> ShowS

Eq BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT

Methods

(==) :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8 -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8 -> Bool

(/=) :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8 -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8 -> Bool

type Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT

type Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8 = D1 ('MetaData "BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8" "Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT" "hs-samtools-0.10.0.3-inplace" 'False) (C1 ('MetaCons "BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word8" 'PrefixI 'True) ((S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_bopt_word8_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 ByteString) :*: S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_bopt_word8_type") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 ByteString)) :*: (S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_bopt_word8_count") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 Word32) :*: S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_bopt_word8_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Seq Word8)))))

data BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16

cCsSiIf of the last optional field (type B).

See section 4.2 of the SAM v1.6 specification documentation.

Constructors

BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16

Fields

• bam_v1_6_bam_alignment_optionalfields_bopt_int16_tag :: ByteString
• bam_v1_6_bam_alignment_optionalfields_bopt_int16_type :: ByteString
• bam_v1_6_bam_alignment_optionalfields_bopt_int16_count :: Word32
• bam_v1_6_bam_alignment_optionalfields_bopt_int16_value :: Seq Int16

Instances

Generic BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT

Associated Types

type Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16 :: Type -> Type

Methods

from :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16 -> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16 x

to :: Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16 x -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16

Show BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT

Methods

showsPrec :: Int -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16 -> ShowS

show :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16 -> String

showList :: [BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16] -> ShowS

Eq BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT

Methods

(==) :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16 -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16 -> Bool

(/=) :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16 -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16 -> Bool

type Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT

type Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16 = D1 ('MetaData "BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16" "Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT" "hs-samtools-0.10.0.3-inplace" 'False) (C1 ('MetaCons "BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int16" 'PrefixI 'True) ((S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_bopt_int16_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 ByteString) :*: S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_bopt_int16_type") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 ByteString)) :*: (S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_bopt_int16_count") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 Word32) :*: S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_bopt_int16_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Seq Int16)))))

data BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16

cCsSiIf of the last optional field (type B).

See section 4.2 of the SAM v1.6 specification documentation.

Constructors

BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16

Fields

• bam_v1_6_bam_alignment_optionalfields_bopt_word16_tag :: ByteString
• bam_v1_6_bam_alignment_optionalfields_bopt_word16_type :: ByteString
• bam_v1_6_bam_alignment_optionalfields_bopt_word16_count :: Word32
• bam_v1_6_bam_alignment_optionalfields_bopt_word16_value :: Seq Word16

Instances

Generic BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT

Associated Types

type Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16 :: Type -> Type

Methods

from :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16 -> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16 x

to :: Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16 x -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16

Show BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT

Methods

showsPrec :: Int -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16 -> ShowS

show :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16 -> String

showList :: [BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16] -> ShowS

Eq BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT

Methods

(==) :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16 -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16 -> Bool

(/=) :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16 -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16 -> Bool

type Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT

type Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16 = D1 ('MetaData "BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16" "Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT" "hs-samtools-0.10.0.3-inplace" 'False) (C1 ('MetaCons "BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word16" 'PrefixI 'True) ((S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_bopt_word16_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 ByteString) :*: S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_bopt_word16_type") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 ByteString)) :*: (S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_bopt_word16_count") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 Word32) :*: S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_bopt_word16_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Seq Word16)))))

data BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32

cCsSiIf of the last optional field (type B).

See section 4.2 of the SAM v1.6 specification documentation.

Constructors

BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32

Fields

• bam_v1_6_bam_alignment_optionalfields_bopt_int32_tag :: ByteString
• bam_v1_6_bam_alignment_optionalfields_bopt_int32_type :: ByteString
• bam_v1_6_bam_alignment_optionalfields_bopt_int32_count :: Word32
• bam_v1_6_bam_alignment_optionalfields_bopt_int32_value :: Seq Int32

Instances

Generic BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT

Associated Types

type Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32 :: Type -> Type

Methods

from :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32 -> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32 x

to :: Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32 x -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32

Show BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT

Methods

showsPrec :: Int -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32 -> ShowS

show :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32 -> String

showList :: [BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32] -> ShowS

Eq BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT

Methods

(==) :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32 -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32 -> Bool

(/=) :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32 -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32 -> Bool

type Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT

type Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32 = D1 ('MetaData "BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32" "Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT" "hs-samtools-0.10.0.3-inplace" 'False) (C1 ('MetaCons "BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Int32" 'PrefixI 'True) ((S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_bopt_int32_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 ByteString) :*: S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_bopt_int32_type") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 ByteString)) :*: (S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_bopt_int32_count") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 Word32) :*: S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_bopt_int32_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Seq Int32)))))

data BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32

cCsSiIf of the last optional field (type B).

See section 4.2 of the SAM v1.6 specification documentation.

Constructors

BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32

Fields

• bam_v1_6_bam_alignment_optionalfields_bopt_word32_tag :: ByteString
• bam_v1_6_bam_alignment_optionalfields_bopt_word32_type :: ByteString
• bam_v1_6_bam_alignment_optionalfields_bopt_word32_count :: Word32
• bam_v1_6_bam_alignment_optionalfields_bopt_word32_value :: Seq Word32

Instances

Generic BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT

Associated Types

type Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32 :: Type -> Type

Methods

from :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32 -> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32 x

to :: Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32 x -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32

Show BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT

Methods

showsPrec :: Int -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32 -> ShowS

show :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32 -> String

showList :: [BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32] -> ShowS

Eq BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT

Methods

(==) :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32 -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32 -> Bool

(/=) :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32 -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32 -> Bool

type Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT

type Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32 = D1 ('MetaData "BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32" "Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT" "hs-samtools-0.10.0.3-inplace" 'False) (C1 ('MetaCons "BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Word32" 'PrefixI 'True) ((S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_bopt_word32_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 ByteString) :*: S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_bopt_word32_type") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 ByteString)) :*: (S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_bopt_word32_count") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 Word32) :*: S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_bopt_word32_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Seq Word32)))))

data BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float

cCsSiIf of the last optional field (type B).

See section 4.2 of the SAM v1.6 specification documentation.

Constructors

BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float

Fields

• bam_v1_6_bam_alignment_optionalfields_bopt_float_tag :: ByteString
• bam_v1_6_bam_alignment_optionalfields_bopt_float_type :: ByteString
• bam_v1_6_bam_alignment_optionalfields_bopt_float_count :: Word32
• bam_v1_6_bam_alignment_optionalfields_bopt_float_value :: Seq Float

Instances

Generic BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT

Associated Types

type Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float :: Type -> Type

Methods

from :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float -> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float x

to :: Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float x -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float

Show BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT

Methods

showsPrec :: Int -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float -> ShowS

show :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float -> String

showList :: [BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float] -> ShowS

Eq BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT

Methods

(==) :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float -> Bool

(/=) :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float -> Bool

type Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT

type Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float = D1 ('MetaData "BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float" "Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT" "hs-samtools-0.10.0.3-inplace" 'False) (C1 ('MetaCons "BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_Float" 'PrefixI 'True) ((S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_bopt_float_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 ByteString) :*: S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_bopt_float_type") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 ByteString)) :*: (S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_bopt_float_count") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 Word32) :*: S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_bopt_float_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Seq Float)))))

data BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType

Sum type that can represent any of the BAM_V1_6_BAM_Alignment_OptionalFields_BOPT types.

Constructors

BOPTInt8

BOPTWord8

BOPTInt16

BOPTWord16

BOPTInt32

BOPTWord32

BOPTFloat

BOPTEmpty

Instances

Generic BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT

Associated Types

type Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType :: Type -> Type

Methods

from :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType -> Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType x

to :: Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType x -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType

Eq BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT

Methods

(==) :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType -> Bool

(/=) :: BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType -> BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType -> Bool

type Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT

type Rep BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType = D1 ('MetaData "BAM_V1_6_BAM_Alignment_OptionalFields_BOPT_SumType" "Data.BAM.Version1_6.BAM.Alignment.OptionalFields.BOPT" "hs-samtools-0.10.0.3-inplace" 'False) (((C1 ('MetaCons "BOPTInt8" 'PrefixI 'False) (U1 :: Type -> Type) :+: C1 ('MetaCons "BOPTWord8" 'PrefixI 'False) (U1 :: Type -> Type)) :+: (C1 ('MetaCons "BOPTInt16" 'PrefixI 'False) (U1 :: Type -> Type) :+: C1 ('MetaCons "BOPTWord16" 'PrefixI 'False) (U1 :: Type -> Type))) :+: ((C1 ('MetaCons "BOPTInt32" 'PrefixI 'False) (U1 :: Type -> Type) :+: C1 ('MetaCons "BOPTWord32" 'PrefixI 'False) (U1 :: Type -> Type)) :+: (C1 ('MetaCons "BOPTFloat" 'PrefixI 'False) (U1 :: Type -> Type) :+: C1 ('MetaCons "BOPTEmpty" 'PrefixI 'False) (U1 :: Type -> Type))))