Copyright	(c) Matthew Mosior 2024
License	BSD-style
Maintainer	mattm.github@gmail.com
Portability	portable
Safe Haskell	Safe-Inferred
Language	Haskell2010

Data.BAM.Version1_6.BAM.BAMHeader

Contents

BAM_V1_6_BAM_BAMHeader version 1.6 data type

Description

This library enables the decoding/encoding of SAM, BAM and CRAM file formats.

Synopsis

data BAM_V1_6_BAM_BAMHeader = BAM_V1_6_BAM_BAMHeader {
}

BAM_V1_6_BAM_BAMHeader version 1.6 data type

data BAM_V1_6_BAM_BAMHeader Source #

Custom BAM_V1_6_BAM_BAMHeader (BAM version 1.6) data type.

See the SAM v1.6 specification documentation.

Constructors

BAM_V1_6_BAM_BAMHeader

Fields

bam_v1_6_bam_bamheader_magic :: ByteString
BAM magic string (magic). This should be BAM1.
bam_v1_6_bam_bamheader_l_text :: Word32
Length of the header text, including any NUL padding (l_text).
bam_v1_6_bam_bamheader_text :: ByteString
Plain header text in SAM; not necessarily NUL-terminated.
bam_v1_6_bam_bamheader_n_ref :: Word32
Number of reference sequences (n_ref).
bam_v1_6_bam_bamheader_reference_information :: Seq BAM_V1_6_BAM_Reference_Information
List of reference information (n = bam_v1_6_bam_n_ref).

Instances

Instances details

Generic BAM_V1_6_BAM_BAMHeader Source #
Instance details Defined in Data.BAM.Version1_6.BAM.BAMHeader Associated Types type Rep BAM_V1_6_BAM_BAMHeader :: Type -> Type # Methods from :: BAM_V1_6_BAM_BAMHeader -> Rep BAM_V1_6_BAM_BAMHeader x # to :: Rep BAM_V1_6_BAM_BAMHeader x -> BAM_V1_6_BAM_BAMHeader #
Show BAM_V1_6_BAM_BAMHeader Source #
Instance details Defined in Data.BAM.Version1_6.BAM.BAMHeader Methods showsPrec :: Int -> BAM_V1_6_BAM_BAMHeader -> ShowS # show :: BAM_V1_6_BAM_BAMHeader -> String # showList :: [BAM_V1_6_BAM_BAMHeader] -> ShowS #
Eq BAM_V1_6_BAM_BAMHeader Source #
Instance details Defined in Data.BAM.Version1_6.BAM.BAMHeader Methods (==) :: BAM_V1_6_BAM_BAMHeader -> BAM_V1_6_BAM_BAMHeader -> Bool # (/=) :: BAM_V1_6_BAM_BAMHeader -> BAM_V1_6_BAM_BAMHeader -> Bool #
type Rep BAM_V1_6_BAM_BAMHeader Source #
Instance details Defined in Data.BAM.Version1_6.BAM.BAMHeader type Rep BAM_V1_6_BAM_BAMHeader = D1 ('MetaData "BAM_V1_6_BAM_BAMHeader" "Data.BAM.Version1_6.BAM.BAMHeader" "hs-samtools-0.10.0.3-inplace" 'False) (C1 ('MetaCons "BAM_V1_6_BAM_BAMHeader" 'PrefixI 'True) ((S1 ('MetaSel ('Just "bam_v1_6_bam_bamheader_magic") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 ByteString) :: S1 ('MetaSel ('Just "bam_v1_6_bam_bamheader_l_text") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 Word32)) :: (S1 ('MetaSel ('Just "bam_v1_6_bam_bamheader_text") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 ByteString) :: (S1 ('MetaSel ('Just "bam_v1_6_bam_bamheader_n_ref") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 Word32) :: S1 ('MetaSel ('Just "bam_v1_6_bam_bamheader_reference_information") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 (Seq BAM_V1_6_BAM_Reference_Information))))))