korfu: The Korfu ORF Utility
Reads nucleotide sequences in FASTA format, and generates predicted protein sequences, based on BLASTX hits. The predictions are constructed by merging information from multiple BLAST hits. Korfu can also also generate all (six-frame) translations (with the '--all' option)
Downloads
- korfu-0.2.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
Maintainer's Corner
For package maintainers and hackage trustees
Candidates
- No Candidates
| Versions [RSS] | 0.1, 0.1.1, 0.2 |
|---|---|
| Dependencies | base (>=3 && <5), bio (>=0.4), bytestring, haskell98, simpleargs [details] |
| License | LicenseRef-GPL |
| Author | Ketil Malde |
| Maintainer | Ketil Malde <ketil@malde.org> |
| Category | Bioinformatics |
| Home page | http://blog.malde.org/ |
| Uploaded | by KetilMalde at 2010-09-10T11:51:02Z |
| Distributions | |
| Reverse Dependencies | 1 direct, 0 indirect [details] |
| Executables | korfu |
| Downloads | 2471 total (9 in the last 30 days) |
| Rating | (no votes yet) [estimated by Bayesian average] |
| Your Rating | |
| Status | Docs not available [build log] All reported builds failed as of 2016-12-29 [all 8 reports] |