SLynx.Examine.Options

Creation date: Sun Oct 7 17:29:45 2018.

Documentation

data ExamineArguments

Arguments needed to examine sequences.

Constructors

ExamineArguments

Fields

• exAlphabet :: Alphabet
• exInFile :: FilePath
• exPerSite :: Bool
• exDivergence :: Bool

Instances

FromJSON ExamineArguments

Defined in SLynx.Examine.Options

Methods

parseJSON :: Value -> Parser ExamineArguments

parseJSONList :: Value -> Parser [ExamineArguments]

omittedField :: Maybe ExamineArguments

ToJSON ExamineArguments

Defined in SLynx.Examine.Options

Methods

toJSON :: ExamineArguments -> Value

toEncoding :: ExamineArguments -> Encoding

toJSONList :: [ExamineArguments] -> Value

toEncodingList :: [ExamineArguments] -> Encoding

omitField :: ExamineArguments -> Bool

Generic ExamineArguments

Defined in SLynx.Examine.Options

Associated Types

type Rep ExamineArguments :: Type -> Type

Methods

from :: ExamineArguments -> Rep ExamineArguments x

to :: Rep ExamineArguments x -> ExamineArguments

Show ExamineArguments

Defined in SLynx.Examine.Options

Methods

showsPrec :: Int -> ExamineArguments -> ShowS

show :: ExamineArguments -> String

showList :: [ExamineArguments] -> ShowS

Reproducible ExamineArguments

Defined in SLynx.Examine.Options

Methods

inFiles :: ExamineArguments -> [FilePath]

outSuffixes :: ExamineArguments -> [String]

getSeed :: ExamineArguments -> Maybe SeedOpt

setSeed :: ExamineArguments -> SeedOpt -> ExamineArguments

parser :: Parser ExamineArguments

cmdName :: String

cmdDsc :: [String]

cmdFtr :: [String]

Eq ExamineArguments

Defined in SLynx.Examine.Options

Methods

(==) :: ExamineArguments -> ExamineArguments -> Bool

(/=) :: ExamineArguments -> ExamineArguments -> Bool

type Rep ExamineArguments

Defined in SLynx.Examine.Options

type Rep ExamineArguments = D1 ('MetaData "ExamineArguments" "SLynx.Examine.Options" "slynx-0.8.0.0-GoRrvS1z0ZaD6smdjYnhWO" 'False) (C1 ('MetaCons "ExamineArguments" 'PrefixI 'True) ((S1 ('MetaSel ('Just "exAlphabet") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 Alphabet) :*: S1 ('MetaSel ('Just "exInFile") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 FilePath)) :*: (S1 ('MetaSel ('Just "exPerSite") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 Bool) :*: S1 ('MetaSel ('Just "exDivergence") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 Bool))))

examineArguments :: Parser ExamineArguments

Command line parser.