slynx-0.8.0.0: Handle molecular sequences

Index

alphabetOptSLynx.Tools
argsEDMFileSLynx.Simulate.Options
argsGammaParamsSLynx.Simulate.Options
argsLengthSLynx.Simulate.Options
argsMixtureModelGlobalNormalizationSLynx.Simulate.Options
argsMixtureModelStringSLynx.Simulate.Options
argsMixtureWeightsSLynx.Simulate.Options
argsSeedSLynx.Simulate.Options
argsSiteprofilesFilesSLynx.Simulate.Options
argsSubstitutionModelStringSLynx.Simulate.Options
argsTreeFileSLynx.Simulate.Options
ccAlphabetSLynx.Concatenate.Options
ccInFilesSLynx.Concatenate.Options
CommandArgumentsSLynx.Options
ConcatenateSLynx.Options
ConcatenateArguments 
1 (Type/Class)SLynx.Concatenate.Options
2 (Data Constructor)SLynx.Concatenate.Options
concatenateArgumentsSLynx.Concatenate.Options
concatenateCmdSLynx.Concatenate.Concatenate
exAlphabetSLynx.Examine.Options
ExamineSLynx.Options
ExamineArguments 
1 (Type/Class)SLynx.Examine.Options
2 (Data Constructor)SLynx.Examine.Options
examineArgumentsSLynx.Examine.Options
examineCmdSLynx.Examine.Examine
exDivergenceSLynx.Examine.Options
exInFileSLynx.Examine.Options
exPerSiteSLynx.Examine.Options
fcAlphabetSLynx.Filter.Options
fcInFileSLynx.Filter.Options
fcStandardSLynx.Filter.Options
FilterColsSLynx.Options
FilterColsArguments 
1 (Type/Class)SLynx.Filter.Options
2 (Data Constructor)SLynx.Filter.Options
filterColsArgumentsSLynx.Filter.Options
filterColsCmdSLynx.Filter.Filter
FilterRowsSLynx.Options
FilterRowsArguments 
1 (Type/Class)SLynx.Filter.Options
2 (Data Constructor)SLynx.Filter.Options
filterRowsArgumentsSLynx.Filter.Options
filterRowsCmdSLynx.Filter.Filter
frAlphabetSLynx.Filter.Options
frInFileSLynx.Filter.Options
frLongerSLynx.Filter.Options
frShorterSLynx.Filter.Options
frStandardSLynx.Filter.Options
GammaRateHeterogeneityParamsSLynx.Simulate.Options
getOutSuffixesSLynx.SubSample.Options
getPhyloModelSLynx.Simulate.PhyloModel
GlobalNormalizationSLynx.Simulate.Options
LocalNormalizationSLynx.Simulate.Options
MixtureModelGlobalNormalizationSLynx.Simulate.Options
readSeqsSLynx.Tools
rSLynxSLynx.SLynx
SimulateSLynx.Options
SimulateArguments 
1 (Type/Class)SLynx.Simulate.Options
2 (Data Constructor)SLynx.Simulate.Options
simulateArgumentsSLynx.Simulate.Options
simulateCmdSLynx.Simulate.Simulate
simulateFooterSLynx.Simulate.Options
slynxSLynx.SLynx
ssAlphabetSLynx.SubSample.Options
ssInFileSLynx.SubSample.Options
ssMbSeedSLynx.SubSample.Options
ssNAlignmentsSLynx.SubSample.Options
ssNSitesSLynx.SubSample.Options
SubSampleSLynx.Options
SubSampleArguments 
1 (Type/Class)SLynx.SubSample.Options
2 (Data Constructor)SLynx.SubSample.Options
subSampleArgumentsSLynx.SubSample.Options
subSampleCmdSLynx.SubSample.SubSample
trAlphabetSLynx.Translate.Options
TranslateSLynx.Options
TranslateArguments 
1 (Type/Class)SLynx.Translate.Options
2 (Data Constructor)SLynx.Translate.Options
translateArgumentsSLynx.Translate.Options
translateCmdSLynx.Translate.Translate
trInFileSLynx.Translate.Options
trReadingFrameSLynx.Translate.Options
trUniversalCodeSLynx.Translate.Options