xsact: Cluster EST sequences

Xsact is an EST clustering program with a variety of output options. This package exposes the internal libraries, and provides 4 binaries:

• xsact; implements a complete multiple-matching clustering algorithm.

• xcerpt; Extract sequences matching a list of labels.

• xplit; This implements a simple splitter for xsact's UniGene-formatted files. Useful if you want to run an assembler on individual clusters.

• xtract; the eXperimental TRanscript Assembly/Consensus Tool. The idea is to construct the splice graph from each EST cluster in the input, by first constructing and then traversing the de Bruijn graph of $k-1$-words.

Modules

[Index]

Downloads

• xsact-1.6.tar.gz [browse] (Cabal source package)
• Package description (as included in the package)

Maintainer's Corner

Package maintainers

• GwernBranwen, KetilMalde

For package maintainers and hackage trustees

• edit package information

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