The BiobaseTrainingData package

[Tags:gpl, library, program]

Parameter training for RNA secondary structure prediction tools requires data to train on. Since there are a number of different available formats, and handling them all in the training tools is a pain, we have this library and programs. MkTrainingData transforms different formats and they all produce a common training data format. This format is Haskell-readable (and only partially human-readable) line-by-line. Generating additional training data is therefor easy as one can just cat together different training files.

Note that several features are designed around extended RNA secondary structures.

Now with some filtering and manipulation options.

Properties

Versions 0.1.0.0, 0.1.1.0, 0.1.2.0, 0.1.2.2, 0.1.2.3
Dependencies base (>3 && <5), BiobaseDotP, BiobaseFR3D, BiobaseXNA (>=0.5.0.1), bytestring, cmdargs (==0.8.*), either-unwrap, iteratee, vector [details]
License GPL-3
Copyright Christian Hoener zu Siederdissen, 2011
Author Christian Hoener zu Siederdissen
Maintainer choener@tbi.univie.ac.at
Stability experimental
Category Bioinformatics
Home page http://www.tbi.univie.ac.at/~choener/
Uploaded Thu Sep 29 13:24:59 UTC 2011 by ChristianHoener
Distributions NixOS:0.1.2.3
Downloads 1477 total (13 in the last 30 days)
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Status Docs uploaded by user
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