The BiobaseTrainingData package

[Tags: gpl, library, program]

Parameter training for RNA secondary structure prediction tools requires data to train on. Since there are a number of different available formats, and handling them all in the training tools is a pain, we have this library and programs. MkTrainingData transforms different formats and they all produce a common training data format. This format is Haskell-readable (and only partially human-readable) line-by-line. Generating additional training data is therefor easy as one can just cat together different training files.

Note that several features are designed around extended RNA secondary structures.

Now with some filtering and manipulation options.


Properties

Versions0.1.0.0, 0.1.1.0, 0.1.2.0, 0.1.2.2, 0.1.2.3
Dependenciesbase (>3 && <5), BiobaseDotP, BiobaseFR3D, BiobaseXNA (>=0.5.0.1), bytestring, cmdargs (==0.8.*), either-unwrap, iteratee, vector
LicenseGPL-3
CopyrightChristian Hoener zu Siederdissen, 2011
AuthorChristian Hoener zu Siederdissen
Maintainerchoener@tbi.univie.ac.at
Stabilityexperimental
CategoryBioinformatics
Home pagehttp://www.tbi.univie.ac.at/~choener/
ExecutablesMkTrainingData
Upload dateThu Sep 29 13:24:59 UTC 2011
Uploaded byChristianHoener
Downloads499 total (37 in last 30 days)

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