The BiobaseXNA package

[Tags: gpl, library, program]

This is a base library for bioinformatics with emphasis on RNA and DNA primary structure as well as amino acid sequences.

Provided are efficient encodings for short sequences, as required by RNA folding tools. Extended RNA secondary structures can be represented as well.

Contains data from:

Frequency and isostericity of RNA base pairs
Jesse Stombaugh, Craig L. Zirbel, Eric Westhof, and Neocles B. Leontis
Nucl. Acids Res. (2009)

http://dx.crossref.org/10.1093%2Fnar%2Fgkp011


Properties

Versions0.5.0.0, 0.5.0.1, 0.5.1.0, 0.5.2.0, 0.5.3.0, 0.5.4.0, 0.5.5.0, 0.5.6.0, 0.6.0.0, 0.6.2.0, 0.6.2.1, 0.6.2.2, 0.6.2.3, 0.6.2.4, 0.6.2.5, 0.6.3.0, 0.6.3.1, 0.7.0.0, 0.7.0.1, 0.7.0.2, 0.8.1.0, 0.8.1.1, 0.8.2.0, 0.8.3.0
Dependenciesbase (>3 && <5), bytestring (>=0.10), cmdargs (>=0.10), containers (>=0.4), csv (>=0.1.2), file-embed (>=0.0.4.7), mtl (>=2.1), primitive (>=0.5), PrimitiveArray (>=0.5.4), repa (>=3.2), text (>=0.11), tuple (>=0.2), vector (>=0.10), vector-th-unbox (>=0.2)
LicenseGPL-3
CopyrightChristian Hoener zu Siederdissen, 2011-2014
AuthorChristian Hoener zu Siederdissen
Maintainerchoener@tbi.univie.ac.at
Stabilityexperimental
CategoryBioinformatics
Home pagehttp://www.tbi.univie.ac.at/~choener/
Source repositoryhead: git clone git://github.com/choener/BiobaseXNA
ExecutablesSubOptDistance
Upload dateTue Apr 15 22:14:48 UTC 2014
Uploaded byChristianHoener
Downloads2215 total (164 in last 30 days)

Modules

[Index]

Downloads

Maintainers' corner

For package maintainers and hackage trustees