The BiobaseXNA package

[Tags: gpl, library, program]

This is a base library for bioinformatics with emphasis on RNA and DNA primary structure as well as amino acid sequences.

Provided are efficient encodings for short sequences, as required by RNA folding tools. Extended RNA secondary structures can be represented as well.

Contains data from:

Frequency and isostericity of RNA base pairs
Jesse Stombaugh, Craig L. Zirbel, Eric Westhof, and Neocles B. Leontis
Nucl. Acids Res. (2009)

http://dx.crossref.org/10.1093%2Fnar%2Fgkp011


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Versions0.5.0.0, 0.5.0.1, 0.5.1.0, 0.5.2.0, 0.5.3.0, 0.5.4.0, 0.5.5.0, 0.5.6.0, 0.6.0.0, 0.6.2.0, 0.6.2.1, 0.6.2.2, 0.6.2.3, 0.6.2.4, 0.6.2.5, 0.6.3.0, 0.6.3.1, 0.7.0.0, 0.7.0.1, 0.7.0.2, 0.8.1.0, 0.8.1.1, 0.8.2.0, 0.8.3.0, 0.9.1.0, 0.9.1.1, 0.9.2.0 (info)
Change logchangelog.md
Dependenciesaeson (>=0.8 && <0.10), base (>=4.7 && <4.9), bimaps (>=0.0.0.2 && <0.0.1.0), binary (==0.7.*), BiobaseXNA, bytes (==0.15.*), bytestring (==0.10.*), cereal (==0.4.*), cereal-vector (==0.2.*), cmdargs (==0.10.*), containers (==0.5.*), csv (==0.1.*), deepseq (>=1.3 && <1.5), file-embed (==0.0.8.*), hashable (==1.2.*), lens (>=4.0 && <4.13), primitive (>=0.5 && <0.7), PrimitiveArray (>=0.6.0 && <0.6.2), split (==0.2.*), text (>=1.0 && <1.3), tuple (==0.3.*), vector (==0.10.*), vector-binary-instances (==0.2.*), vector-th-unbox (==0.2.*) [details]
LicenseGPL-3
CopyrightChristian Hoener zu Siederdissen, 2011 - 2015
AuthorChristian Hoener zu Siederdissen
Maintainerchoener@bioinf.uni-leipzig.de
Stabilityexperimental
CategoryBioinformatics
Home pagehttps://github.com/choener/BiobaseXNA
Bug trackerhttps://github.com/choener/BiobaseXNA/issues
Source repositoryhead: git clone git://github.com/choener/BiobaseXNA
ExecutablesSubOptDistance
UploadedTue Jul 14 20:28:47 UTC 2015 by ChristianHoener
Downloads5577 total (255 in last 30 days)
Votes
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StatusDocs available [build log]
Last success reported on 2015-07-14 [all 1 reports]

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For package maintainers and hackage trustees

Readme for BiobaseXNA-0.9.2.0

Build Status

BiobaseXNA

Efficient encoding of biological sequences.

Contact

Christian Hoener zu Siederdissen
Leipzig University, Leipzig, Germany
choener@bioinf.uni-leipzig.de
http://www.bioinf.uni-leipzig.de/~choener/