The BiobaseXNA package

[Tags: gpl, library, program]

This is a base library for bioinformatics with emphasis on RNA and DNA primary structure as well as amino acid sequences.

Provided are efficient encodings for short sequences, as required by RNA folding tools. Extended RNA secondary structures can be represented as well.

Contains data from:

Frequency and isostericity of RNA base pairs
Jesse Stombaugh, Craig L. Zirbel, Eric Westhof, and Neocles B. Leontis
Nucl. Acids Res. (2009)

http://dx.crossref.org/10.1093%2Fnar%2Fgkp011

Properties

Versions0.5.0.0, 0.5.0.1, 0.5.1.0, 0.5.2.0, 0.5.3.0, 0.5.4.0, 0.5.5.0, 0.5.6.0, 0.6.0.0, 0.6.2.0, 0.6.2.1, 0.6.2.2, 0.6.2.3, 0.6.2.4, 0.6.2.5, 0.6.3.0, 0.6.3.1, 0.7.0.0, 0.7.0.1, 0.7.0.2, 0.8.1.0, 0.8.1.1, 0.8.2.0, 0.8.3.0, 0.9.1.0, 0.9.1.1 (info)
Change logchangelog.md
Dependenciesaeson (==0.8.*), base (>=4.7 && <4.9), bimaps (==0.0.0.*), binary (==0.7.*), BiobaseXNA, bytes (==0.15.*), bytestring (==0.10.*), cereal (==0.4.*), cereal-vector (==0.2.*), cmdargs (==0.10.*), containers (==0.5.*), csv (==0.1.*), file-embed (==0.0.8.*), hashable (==1.2.*), lens (==4.*), primitive (>=0.5 && <0.7), PrimitiveArray (==0.6.*), split (==0.2.*), text (==1.*), tuple (==0.3.*), vector (==0.10.*), vector-binary-instances (==0.2.*), vector-th-unbox (==0.2.*)
LicenseGPL-3
CopyrightChristian Hoener zu Siederdissen, 2011 - 2015
AuthorChristian Hoener zu Siederdissen
Maintainerchoener@bioinf.uni-leipzig.de
Stabilityexperimental
CategoryBioinformatics
Home pagehttp://www.bioinf.uni-leipzig.de/~choener/
Source repositoryhead: git clone git://github.com/choener/BiobaseXNA
ExecutablesSubOptDistance
UploadedFri May 8 12:11:12 UTC 2015 by ChristianHoener
DistributionsNixOS:0.9.1.1
Downloads4751 total (184 in last 30 days)
StatusDocs available [build log]
Last success reported on 2015-05-08 [all 1 reports]

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