The CMCompare package
Compares two Infernal covariance models. Returns the common MaxiMin score and the offending RNA sequence. High scores point toward low discriminative power of the two models. Based on:
Christian Höner zu Siederdissen, and Ivo L. Hofacker. 2010. Discriminatory power of RNA family models. Bioinformatics 26, no. 18: 453–59
http://bioinformatics.oxfordjournals.org/content/26/18/i453.long
Properties
| Versions | 0.0.1.1, 0.0.1.2, 0.0.1.4, 0.0.1.5 |
|---|---|
| Dependencies | array (0.4.*), base (4.*), BiobaseInfernal (0.7.*), BiobaseXNA (0.6.3.*), cmdargs (≥0.10), containers (0.5.*), lens (3.*) |
| License | GPL-3 |
| Copyright | Christian Hoener zu Siederdissen, Ivo L. Hofacker, 2010 |
| Author | Christian Hoener zu Siederdissen, Ivo L. Hofacker |
| Maintainer | choener@tbi.univie.ac.at |
| Stability | experimental |
| Category | Bioinformatics |
| Home page | http://www.tbi.univie.ac.at/software/cmcompare/ |
| Executables | CMCompare |
| Upload date | Wed Nov 21 17:21:50 UTC 2012 |
| Uploaded by | ChristianHoener |
| Built on | ghc-7.6 |
Modules
- BioInf
Downloads
- CMCompare-0.0.1.4.tar.gz (Cabal source package)
- package description (included in the package)