Forestry: Comparison of trees and forests.
Wikipedia on forestry: "the science and craft of creating, managing, using, conserving, and repairing forests and associated resources."
This is a modest starting point and provides just:
forest alignments
tree alignments
Build this library and executable with GHC-8.0.2
To enable RNAforestry, use cabal new-build -frnaforestry or
cabal new-configure -w compiler-path -frnaforestry && cabal
new-build. We suggest using cabal with the nix-style local
build options.
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Flags
Manual Flags
| Name | Description | Default |
|---|---|---|
| rnaforestry | build the RNAforestry example application | Disabled |
Use -f <flag> to enable a flag, or -f -<flag> to disable that flag. More info
Downloads
- Forestry-0.0.0.1.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
Maintainer's Corner
For package maintainers and hackage trustees
Candidates
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| Versions [RSS] | 0.0.0.1 |
|---|---|
| Change log | changelog.md |
| Dependencies | ADPfusion (>=0.5.2 && <0.5.3), ADPfusionForest (>=0.0.0 && <0.0.1), base (>=4.7 && <5.0), BiobaseNewick (>=0.0.0 && <0.0.1), BiobaseTypes (>=0.1.3 && <0.1.4), containers, ForestStructures (>=0.0.0 && <0.0.1), FormalGrammars (>=0.3.1 && <0.3.2), lens (>=4.0), log-domain (>=0.11), PrimitiveArray (>=0.8.0 && <0.8.1), PrimitiveArray-Pretty (>=0.0.0 && <0.0.1), text (>=1.0), vector (>=0.10) [details] |
| Tested with | ghc ==8.0.2 |
| License | BSD-3-Clause |
| Copyright | Christian Hoener zu Siederdissen, 2017 |
| Author | Christian Hoener zu Siederdissen, Sarah Berkemer, 2017 |
| Maintainer | choener@bioinf.uni-leipzig.de |
| Category | Formal Languages, Bioinformatics |
| Home page | https://github.com/choener/Forestry |
| Bug tracker | https://github.com/choener/Forestry/issues |
| Source repo | head: git clone git://github.com/choener/Forestry |
| Uploaded | by ChristianHoener at 2017-11-23T22:47:08Z |
| Distributions | |
| Reverse Dependencies | 1 direct, 0 indirect [details] |
| Executables | RNAforestry |
| Downloads | 1088 total (3 in the last 30 days) |
| Rating | (no votes yet) [estimated by Bayesian average] |
| Your Rating | |
| Status | Docs available [build log] Last success reported on 2017-11-23 [all 1 reports] |
Readme for Forestry-0.0.0.1
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Forestry: Science and craft of forests
This library provides linear and affine tree alignment algorithms. In addition, a very simple program @RNAforestry@ is provided. This program mimics @RNAforester@.
Contact
Christian Hoener zu Siederdissen
Leipzig University, Leipzig, Germany
choener@bioinf.uni-leipzig.de
http://www.bioinf.uni-leipzig.de/~choener/