The Forestry package

[ Tags: bioinformatics, bsd3, formal-languages, library ] [ Propose Tags ]

Wikipedia on forestry: "the science and craft of creating, managing, using, conserving, and repairing forests and associated resources."

This is a modest starting point and provides just:

Build this library and executable with GHC-8.0.2

To enable RNAforestry, use cabal new-build -frnaforestry or cabal new-configure -w compiler-path -frnaforestry && cabal new-build. We suggest using cabal with the nix-style local build options.

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Change log
Dependencies ADPfusion (==0.5.2.*), ADPfusionForest (==0.0.0.*), base (>=4.7 && <5.0), BiobaseNewick (==0.0.0.*), BiobaseTypes (==0.1.3.*), containers, ForestStructures (==0.0.0.*), FormalGrammars (==0.3.1.*), lens (>=4.0), log-domain (>=0.11), PrimitiveArray (==0.8.0.*), PrimitiveArray-Pretty (==0.0.0.*), text (>=1.0), vector (>=0.10) [details]
License BSD3
Copyright Christian Hoener zu Siederdissen, 2017
Author Christian Hoener zu Siederdissen, Sarah Berkemer, 2017
Category Formal Languages, Bioinformatics
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Source repo head: git clone git://
Uploaded Thu Nov 23 22:47:08 UTC 2017 by ChristianHoener
Distributions NixOS:
Executables RNAforestry
Downloads 181 total (5 in the last 30 days)
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Status Docs available [build log]
Last success reported on 2017-11-23 [all 1 reports]
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build the RNAforestry example application


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Readme for Forestry-

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Forestry: Science and craft of forests

This library provides linear and affine tree alignment algorithms. In addition, a very simple program @RNAforestry@ is provided. This program mimics @RNAforester@.


Christian Hoener zu Siederdissen
Leipzig University, Leipzig, Germany