The BiobaseTypes package

[Tags:bsd3, library, test]

Types used in a number of bioinformatics libraries.

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Dependencies aeson (>=0.8), base (>=4.7 && <5.0), bimaps (==0.1.0.*), binary (>=0.7), cereal (>=0.4), cereal-text (>=0.1), cereal-vector (>=0.2), data-default (>=0.5), deepseq (>=1.3), hashable (>=1.2), intern (>=0.9), primitive (>=0.5), PrimitiveArray (==0.8.0.*), QuickCheck (>=2.7), string-conversions (>=0.4), text (>=1.0), text-binary (>=0.2), vector (>=0.10), vector-binary-instances (>=0.2), vector-th-unbox (>=0.2) [details]
License BSD3
Copyright Christian Hoener zu Siederdissen, 2015 - 2016
Author Christian Hoener zu Siederdissen, 2015 - 2016
Stability experimental
Category Data Structures, Bioinformatics
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Source repository head: git clone git://
Uploaded Mon Mar 13 14:49:09 UTC 2017 by ChristianHoener
Distributions NixOS:
Downloads 1050 total (51 in the last 30 days)
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Status Docs available [build log]
Last success reported on 2017-03-13 [all 1 reports]




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Readme for BiobaseTypes

Readme for BiobaseTypes-

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A bunch of types in use in different modules:

  • numerical small and large numbers
  • Gibbs free energy change
  • phantom-typed linear indices: these encode the (rather annoying) habit of computational biology of having both 0-based and 1-based data


Christian Hoener zu Siederdissen
Leipzig University, Leipzig, Germany