biostockholm: Parsing and rendering of Stockholm files (used by Pfam, Rfam and Infernal).

[ bioinformatics, bsd3, library ] [ Propose Tags ]

Parsing and rendering of files in Stockholm 1.0 format. Among the users of the Stockholm format are Pfam, Rfam and Infernal. These files hold information about families of proteins or non-coding RNAs. For more information, please see:

Versions 0.1, 0.1.0.1, 0.2, 0.2.1, 0.2.2, 0.3, 0.3.1, 0.3.2, 0.3.3, 0.3.4
Dependencies attoparsec (==0.10.*), attoparsec-conduit (==0.4.*), base (>=3 && <5), biocore (>=0.1 && <0.3), blaze-builder (==0.3.*), blaze-builder-conduit (==0.4.*), bytestring (==0.9.*), conduit (==0.4.*), containers (>=0.2 && <0.6), deepseq (>=1.1 && <1.4) [details]
License BSD-3-Clause
Author Felipe Lessa
Maintainer felipe.lessa@gmail.com
Category Bioinformatics
Source repo head: git clone https://github.com/meteficha/biostockholm
Uploaded by FelipeLessa at Tue Jul 21 22:25:00 UTC 2015
Distributions NixOS:0.3.4
Downloads 3790 total (20 in the last 30 days)
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Status Docs not available [build log]
All reported builds failed as of 2016-10-27 [all 9 reports]
Hackage Matrix CI

Modules

  • Bio
    • Sequence
      • Bio.Sequence.Stockholm
        • Bio.Sequence.Stockholm.Document
        • Bio.Sequence.Stockholm.Stream

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