CMCompare: Infernal covariance model comparison

[ bioinformatics, gpl, library, program ] [ Propose Tags ]

Compares two Infernal covariance models. Returns the common MaxiMin score and the offending RNA sequence. High scores point toward low discriminative power of the two models. Based on:

"Christian Höner zu Siederdissen, and Ivo L. Hofacker. 2010. Discriminatory power of RNA family models. Bioinformatics 26, no. 18: 453–59"

http://bioinformatics.oxfordjournals.org/content/26/18/i453.long

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Versions [RSS] 0.0.1.1, 0.0.1.2, 0.0.1.4, 0.0.1.5
Dependencies array (>=0.4), base (>=4 && <5), BiobaseInfernal (>=0.7.0.1), BiobaseXNA (>=0.6.3.1), cmdargs (>=0.10), containers (>=0.4), lens (>=3 && <4) [details]
License GPL-3.0-only
Copyright Christian Hoener zu Siederdissen, Ivo L. Hofacker, 2010
Author Christian Hoener zu Siederdissen, Ivo L. Hofacker
Maintainer choener@tbi.univie.ac.at
Category Bioinformatics
Home page http://www.tbi.univie.ac.at/software/cmcompare/
Uploaded by ChristianHoener at 2012-11-22T14:57:12Z
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Reverse Dependencies 1 direct, 0 indirect [details]
Executables CMCompare
Downloads 4028 total (6 in the last 30 days)
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