The BiobaseInfernal package

[Tags:gpl, library]

Provides import and export facilities for Infernal/Rfam data formats. We include Stockholm, CM, verbose Infernal results, and tabulated Infernal results. Some small tools are included.

The VerboseHit format is slightly extended to allow simple annotations. This extension should be backward-compatible with standard-compliant parsers.

This package uses Int's to store sequence position information. Don't compile for 32bit. (And yes, this is a TODO, to change to Int64).

Changes in

Changes in


Dependencies attoparsec (==0.10.*), attoparsec-conduit (==0.5.*), base (>3 && <5), BiobaseXNA (==0.7.*), biocore (==0.2), bytestring, bytestring-lexing (==0.4.*), conduit (==0.5.*), containers, either-unwrap (==1.1), lens (==3.*), primitive (>=0.5), PrimitiveArray (==0.5.*), repa (==3.2.*), transformers (==0.3.*), tuple (==0.2.*), vector (>=0.10) [details]
License GPL-3
Copyright Christian Hoener zu Siederdissen, 2011
Author Christian Hoener zu Siederdissen
Stability experimental
Category Bioinformatics
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Source repository head: git clone git://
Uploaded Fri Sep 20 14:28:00 UTC 2013 by ChristianHoener
Distributions NixOS:
Downloads 4537 total (18 in the last 30 days)
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Status Docs uploaded by user
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