RNAdraw: Draw RNA secondary structures

[ bioinformatics, gpl, library, program ] [ Propose Tags ]

We provide a number of ways to draw RNA secondary structures. In particular, the following types of structures can be (more or less elegantly) drawn:

  • Dot plots for mfe and partition function

  • canonical RNA secondary structures without pseudoknots

  • non-canonical extended RNA secondary structures

  • pseudoknotted secondary structures

From top to bottom, the beauty of presentation degrades. Some emphasis is put on ASCII-drawings, especially Vienna dot-bracket-like notation.


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Change log changelog
Dependencies array, base (>3 && <5), BiobaseXNA (>=0.8.1), bytestring, cmdargs (>=0.10), containers, PrimitiveArray (>=0.5.3), QuasiText (>=, repa (>=3.2), split (>=0.2), text, vector (>=0.10) [details]
License GPL-3.0-only
Copyright Christian Hoener zu Siederdissen, 2011-2014
Author Christian Hoener zu Siederdissen
Maintainer choener@tbi.univie.ac.at
Category Bioinformatics
Home page http://www.tbi.univie.ac.at/~choener/
Uploaded by ChristianHoener at 2014-02-03T21:49:30Z
Reverse Dependencies 1 direct, 0 indirect [details]
Executables RNAdotplot
Downloads 1472 total (4 in the last 30 days)
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Status Docs available [build log]
Successful builds reported [all 1 reports]