biosff: Library and executables for working with SFF files

[ bioinformatics, lgpl, library ] [ Propose Tags ]

The library contains the functionality for reading and writing SFF files (sequencing data from 454 and Ion Torrent). It duplicates code from (and is incompatible with) the "bio" library.

Modules

[Index]

  • Bio
    • Sequence
      • Bio.Sequence.SFF
      • Bio.Sequence.SFF_filters

Flags

Automatic Flags
NameDescriptionDefault
flower

Build the flower executable.

Enabled
frecover

Build the frecover executable.

Enabled
fclip

Build the fclip executable.

Enabled

Use -f <flag> to enable a flag, or -f -<flag> to disable that flag. More info

Downloads

Maintainer's Corner

Package maintainers

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Candidates

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Versions [RSS] 0.1, 0.2, 0.3.1, 0.3.2, 0.3.3, 0.3.4, 0.3.5, 0.3.7, 0.3.7.1
Dependencies array (>=0.4), base (>=3 && <5), binary, biocore (>=0.3), bytestring, cmdargs, mtl (>=2) [details]
License LGPL-2.1-only
Author Ketil Malde
Maintainer ketil@malde.org
Category Bioinformatics
Home page http://biohaskell.org/
Source repo head: darcs get http://malde.org/~ketil/biohaskell/biosff
this: darcs get http://malde.org/~ketil/biohaskell/biosff --tag 0.3.7
Uploaded by KetilMalde at 2013-09-28T09:04:26Z
Distributions
Reverse Dependencies 1 direct, 0 indirect [details]
Executables fclip, frecover, flower
Downloads 9056 total (21 in the last 30 days)
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Status Docs uploaded by user [build log]
All reported builds failed [all 1 reports]