flower: Analyze 454 flowgrams (.SFF files)
flower - FLOWgram ExtractoR tools
The flower executable reads files in SFF-format and produces various output, including sequences with quality, or flowgram data in tabular format.
The fselect executable extracts reads from SFF-files, generating a new SFF-file with a subset of the reads based on various criteria.
Sometimes SFF files will appear to be corrupted, with all-zero blocks in the file. The frecover program ignores these and tries to resync with the file after an invalid region. This was likely a one-time bug in the 454 software, so this program is probably not so useful any more.
The Darcs repository is at http://malde.org/~ketil/biohaskell/flower.
Downloads
- flower-0.4.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
Maintainer's Corner
For package maintainers and hackage trustees
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| Versions [RSS] | 0.1, 0.1.1, 0.1.2, 0.2, 0.3, 0.4, 0.5, 0.6, 0.6.1, 0.6.3, 0.6.5, 0.7, 0.7.2 |
|---|---|
| Dependencies | array (>=0.1), base (>=3 && <5), binary (>=0.4 && <0.5), bio (>=0.4.2), bytestring (>=0.9.1), cmdargs (<=0.1.1), containers, random [details] |
| Tested with | ghc ==6.8.3 |
| License | LicenseRef-GPL |
| Author | Ketil Malde |
| Maintainer | Ketil Malde <ketil@malde.org> |
| Category | Bioinformatics |
| Home page | http://malde.org/~ketil/biohaskell/flower |
| Uploaded | by KetilMalde at 2010-09-14T07:10:34Z |
| Distributions | |
| Reverse Dependencies | 1 direct, 0 indirect [details] |
| Executables | flowt, frename, frecover, flowselect, flower |
| Downloads | 9756 total (22 in the last 30 days) |
| Rating | (no votes yet) [estimated by Bayesian average] |
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| Status | Docs not available [build log] All reported builds failed as of 2016-12-28 [all 7 reports] |