flower: Analyze 454 flowgrams (.SFF files)
flower - FLOWgram ExtractoR tools
The flower executable reads files in SFF-format and produces various output,
including sequences with quality, or flowgram data in tabular format. By default,
it outputs a textual representation of the data in the SFF-file, much like
sffinfo from Roche does.
The fselect executable extracts reads from SFF-files, generating a new SFF-file with a subset of the reads based on various criteria.
Sometimes SFF files will appear to be corrupted, with all-zero blocks in the file. The frecover program ignores these and tries to resync with the file after an invalid region. This was likely a one-time bug in the 454 software, so this program is probably not so useful any more.
Downloads
- flower-0.6.3.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
Maintainer's Corner
For package maintainers and hackage trustees
Candidates
- No Candidates
| Versions [RSS] | 0.1, 0.1.1, 0.1.2, 0.2, 0.3, 0.4, 0.5, 0.6, 0.6.1, 0.6.3, 0.6.5, 0.7, 0.7.2 |
|---|---|
| Dependencies | array (>=0.1), base (>=3 && <5), binary (>=0.4 && <0.5), bio (>=0.4.8), bytestring (>=0.9.1), cmdargs (>=0.5), containers, mtl, random [details] |
| License | LicenseRef-GPL |
| Author | Ketil Malde |
| Maintainer | Ketil Malde <ketil@malde.org> |
| Category | Bioinformatics |
| Home page | http://blog.malde.org/index.php/flower/ |
| Uploaded | by KetilMalde at 2010-11-05T13:38:07Z |
| Distributions | |
| Reverse Dependencies | 1 direct, 0 indirect [details] |
| Executables | flowt, frename, frecover, flowselect, flower |
| Downloads | 9556 total (31 in the last 30 days) |
| Rating | (no votes yet) [estimated by Bayesian average] |
| Your Rating | |
| Status | Docs not available [build log] Successful builds reported [all 7 reports] |