samtools: Binding to the C samtools library

[ bioinformatics, library, mit ] [ Propose Tags ]

Binding to the C samtools library, which reads and writes SAM format alignments, both binary and tab- delimited text formats. It also supports rapid access to specific alignments in a sorted BAM file and access to sequences from indexed Fasta files.

Versions [faq] 0.1, 0.1.1, 0.1.2, 0.1.3, 0.2,, 0.2.1,,, 0.2.2, 0.2.3, 0.2.4,,,
Dependencies base (>=4.3 && <5), bytestring, filepath, haskell98, process, seqloc, vector (>=0.7) [details]
License MIT
Author Nicholas Ingolia
Category Bio
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Uploaded by NicholasIngolia at 2011-04-01T16:47:45Z
Distributions NixOS:
Executables samtest
Downloads 9680 total (6 in the last 30 days)
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Status Hackage Matrix CI
Docs not available [build log]
All reported builds failed as of 2016-12-28 [all 7 reports]


  • Bio
    • SamTools
      • Bio.SamTools.Bam
      • Bio.SamTools.BamIndex
      • Bio.SamTools.Cigar
      • Bio.SamTools.FaIdx



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