bioinformatics-toolkit: A collection of bioinformatics tools

[ bio, library, mit ] [ Propose Tags ]

A collection of bioinformatics tools


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Versions 0.1.0, 0.1.1, 0.2.0, 0.2.1, 0.2.2, 0.2.3, 0.2.4, 0.3.0, 0.3.1, 0.3.2, 0.4.0, 0.4.1, 0.5.0, 0.5.1
Dependencies aeson, aeson-pretty, base (>=4.11 && <5.0), bytestring (>=0.10), bytestring-lexing (>=0.5), case-insensitive, clustering, conduit (>=1.3.0), containers (>=0.5), data-default-class, data-ordlist, double-conversion, hexpat, HsHTSLib (>=1.3.2.3), http-conduit (>=2.1.8), IntervalMap (>=0.5.0.0), lens, math-functions, matrices (>=0.4.3), mtl (>=2.1.3.1), parallel (>=3.2), primitive, split, statistics (>=0.13.2.1), text (>=0.11), transformers (>=0.3.0.0), unordered-containers (>=0.2), vector, vector-algorithms, word8 [details]
License MIT
Copyright (c) 2014-2018 Kai Zhang
Author Kai Zhang
Maintainer kai@kzhang.org
Category Bio
Source repo head: git clone https://github.com/kaizhang/bioinformatics-toolkit.git
Uploaded by kaizhang at Thu May 31 22:23:08 UTC 2018
Distributions NixOS:0.5.1
Downloads 2609 total (35 in the last 30 days)
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Status Docs not available [build log]
All reported builds failed as of 2018-05-31 [all 3 reports]
Hackage Matrix CI

Modules

  • Bio
    • Bio.ChIPSeq
      • Bio.ChIPSeq.FragLen
    • Data
      • Bio.Data.Bam
      • Bio.Data.Bed
        • Bio.Data.Bed.Types
      • Bio.Data.Fasta
      • Bio.Data.Fastq
    • Bio.GO
      • Bio.GO.Parser
    • Bio.Motif
      • Bio.Motif.Alignment
      • Bio.Motif.Merge
      • Bio.Motif.Search
    • RealWorld
      • Bio.RealWorld.BioGRID
      • Bio.RealWorld.ENCODE
      • Bio.RealWorld.Ensembl
      • Bio.RealWorld.GENCODE
      • Bio.RealWorld.ID
      • Bio.RealWorld.UCSC
      • Bio.RealWorld.Uniprot
    • Bio.Seq
      • Bio.Seq.IO
    • Utils
      • Bio.Utils.Functions
      • Bio.Utils.Misc
      • Bio.Utils.Overlap
      • Bio.Utils.Types

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Readme for bioinformatics-toolkit-0.5.1

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Bioinformatics Algorithms