The BiobaseTurner package

[Tags: gpl, library]

A data structure for Mathews / Turner RNA and DNA energy parameters. This library currently only provides an importer, not export functions. There are two reasons: (i) We currently have no use-case where we need more than import facilities (ii) The file structure is geared towards humans, not machines. If you need to be able to export, send a mail.

This is the 2011 post-library split version, hence not deprecated anymore.

NOTE This is rather fragile as some files use different index enumerations, which we handle rather... simplistically. We cannot fix one asymmetry case in dnastack.dh, as we do not change sources.

BIG FAT WARNING indexing now depends on repa shapes and index representations. (with a good reason coming soon). For now, just assume that this has performance benefits.


Properties

Versions0.0.2.1, 0.0.2.2, 0.1.0.0, 0.1.1.0, 0.2.0.0, 0.2.2.0, 0.2.2.1, 0.2.2.2, 0.2.2.3, 0.2.2.4, 0.3.0.0, 0.3.1.0, 0.3.1.1
Dependenciesbase (>3 && <5), BiobaseXNA (==0.6.2.4), bytestring (>=0.9), bytestring-lexing (>=0.4), containers (>=0.4), filepath (>=1), iteratee (>=0.8.8), PrimitiveArray (==0.2.1.1), split (>=0.1.4), vector (==0.9.*)
LicenseGPL-3
CopyrightChristian Hoener zu Siederdissen, 2010-2012
AuthorChristian Hoener zu Siederdissen
Maintainerchoener@tbi.univie.ac.at
Stabilityexperimental
CategoryBioinformatics
Home pagehttp://www.tbi.univie.ac.at/~choener/
Source repositoryhead: git clone git://github.com/choener/BiobaseTurner
Upload dateFri Mar 30 15:38:33 UTC 2012
Uploaded byChristianHoener
Downloads1233 total (95 in last 30 days)

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