BiobaseTurner: Import Turner RNA parameters
A data structure for Mathews / Turner RNA and DNA energy parameters. This library currently only provides an importer, not export functions. There are two reasons: (i) We currently have no use-case where we need more than import facilities (ii) The file structure is geared towards humans, not machines. If you need to be able to export, send a mail.
NOTE This is rather fragile as some files use different index enumerations, which we handle rather... simplistically.
In principle, all parameters should be symmetric regarding the stem direction. However, there is one asymmetry case in dnastack.dh. We do not fix this problem as we do not change the source files.
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- BiobaseTurner-0.3.1.1.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
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| Versions [RSS] | 0.0.2.1, 0.0.2.2, 0.1.0.0, 0.1.1.0, 0.2.0.0, 0.2.2.0, 0.2.2.1, 0.2.2.2, 0.2.2.3, 0.2.2.4, 0.3.0.0, 0.3.1.0, 0.3.1.1 |
|---|---|
| Dependencies | base (>3 && <5), BiobaseXNA (>=0.7), bytestring (>=0.9), bytestring-lexing (>=0.4), conduit (>=0.5), containers (>=0.4), filepath (>=1), lens (>=3.8), primitive (>=0.5), PrimitiveArray (>=0.5), repa (>=3.2), split (>=0.2), vector (>=0.10) [details] |
| License | GPL-3.0-only |
| Copyright | Christian Hoener zu Siederdissen, 2010-2013 |
| Author | Christian Hoener zu Siederdissen |
| Maintainer | choener@tbi.univie.ac.at |
| Category | Bioinformatics |
| Home page | http://www.tbi.univie.ac.at/~choener/ |
| Source repo | head: git clone git://github.com/choener/BiobaseTurner |
| Uploaded | by ChristianHoener at 2013-04-25T00:42:45Z |
| Distributions | |
| Reverse Dependencies | 4 direct, 0 indirect [details] |
| Downloads | 11993 total (28 in the last 30 days) |
| Rating | (no votes yet) [estimated by Bayesian average] |
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| Status | Docs uploaded by user Build status unknown [no reports yet] |