The BiobaseTurner package

[Tags: gpl, library]

A data structure for Mathews / Turner RNA and DNA energy parameters. This library currently only provides an importer, not export functions. There are two reasons: (i) We currently have no use-case where we need more than import facilities (ii) The file structure is geared towards humans, not machines. If you need to be able to export, send a mail.

NOTE This is rather fragile as some files use different index enumerations, which we handle rather... simplistically.

In principle, all parameters should be symmetric regarding the stem direction. However, there is one asymmetry case in dnastack.dh. We do not fix this problem as we do not change the source files.


Change logNone available
Dependenciesbase (>3 && <5), BiobaseXNA (>=0.7), bytestring (>=0.9), bytestring-lexing (>=0.4), conduit (>=0.5), containers (>=0.4), filepath (>=1), lens (>=3.8), primitive (>=0.5), PrimitiveArray (>=0.5), repa (>=3.2), split (>=0.2), vector (>=0.10) [details]
CopyrightChristian Hoener zu Siederdissen, 2010-2013
AuthorChristian Hoener zu Siederdissen
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Source repositoryhead: git clone git://
UploadedThu Apr 25 00:42:45 UTC 2013 by ChristianHoener
Downloads3606 total (39 in last 30 days)
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StatusDocs uploaded by user
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