The BiobaseTurner package

[ Tags: bioinformatics, gpl, library ] [ Propose Tags ]

A data structure for Mathews / Turner RNA and DNA energy parameters. This library currently only provides an importer, not export functions. There are two reasons: (i) We currently have no use-case where we need more than import facilities (ii) The file structure is geared towards humans, not machines. If you need to be able to export, send a mail.

This is the 2011 post-library split version, hence not deprecated anymore.

NOTE This is rather fragile as some files use different index enumerations, which we handle rather... simplistically. We cannot fix one asymmetry case in dnastack.dh, as we do not change sources.

BIG FAT WARNING indexing now depends on repa shapes and index representations. (with a good reason coming soon). For now, just assume that this has performance benefits.

Properties

Versions 0.0.2.1, 0.0.2.2, 0.1.0.0, 0.1.1.0, 0.2.0.0, 0.2.2.0, 0.2.2.1, 0.2.2.2, 0.2.2.3, 0.2.2.4, 0.3.0.0, 0.3.1.0, 0.3.1.1
Dependencies base (>3 && <5), BiobaseXNA (==0.6.2.5), bytestring (>=0.9), bytestring-lexing (>=0.4), containers (>=0.4), filepath (>=1), iteratee (>=0.8.8), PrimitiveArray (==0.2.2.0), split (>=0.1.4), vector (==0.9.*) [details]
License GPL-3
Copyright Christian Hoener zu Siederdissen, 2010-2012
Author Christian Hoener zu Siederdissen
Maintainer choener@tbi.univie.ac.at
Category Bioinformatics
Home page http://www.tbi.univie.ac.at/~choener/
Source repository head: git clone git://github.com/choener/BiobaseTurner
Uploaded Sun Jul 8 01:18:04 UTC 2012 by ChristianHoener
Distributions NixOS:0.3.1.1
Downloads 4376 total (75 in the last 30 days)
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