RNAlien: Unsupervized construction of RNA family models

[ bioinformatics, gpl, library, program ] [ Propose Tags ]

RNAlien is a tool for automatic construction of RNAfamily models from a single sequence.

It is available as a commandline tool, for testing or construction of few sequences the webservice can be used.

The source code of RNAlien, as well as the webserver is open source and available via GitHub (License GPL-3):

TaxonomyTools which can be used to visualise the organisms included in a RNAlien result can be found here (License GPL-3):

For instruction how to use RNAlien please see the Help page.


Installation via cabal-install:

cabal install RNAlien
Versions [faq] 1.0.0, 1.1.0, 1.1.1, 1.1.3, 1.2.4, 1.2.5, 1.2.6, 1.2.8, 1.2.9, 1.3.0, 1.3.1, 1.3.7
Dependencies base (>=4.5 && <5), biocore, biofasta, BlastHTTP, blastxml (>=0.3.2), bytestring, cassava, ClustalParser (>=1.1.0), cmdargs, containers, directory, edit-distance, either-unwrap, EntrezHTTP (>=1.0.0), filepath, hierarchical-clustering, HTTP, matrix, parsec, process, random, RNAlien, split, Taxonomy (>=1.0.1), time, vector, ViennaRNAParser (>=1.2.6) [details]
License GPL-3.0-only
Author Florian Eggenhofer
Maintainer egg@tbi.univie.ac.at
Category Bioinformatics
Uploaded by FlorianEggenhofer at Thu Oct 29 15:41:14 UTC 2015
Distributions NixOS:1.3.7
Executables SelectSequences, RNAlienStatistics, RNAlien
Downloads 3401 total (312 in the last 30 days)
Rating 2.0 (votes: 1) [estimated by rule of succession]
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Status Hackage Matrix CI
Docs available [build log]
Last success reported on 2015-10-29 [all 1 reports]




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