The RNAlien package

This is a package candidate release! Here you can preview how this package release will appear once published to the main package index (which can be accomplished via the 'maintain' link below). Please note that once a package has been published to the main package index it cannot be undone! Please consult the package uploading documentation for more information.



RNAlien is a tool for automatic construction of RNAfamily models from a single sequence.

It is available as a commandline tool, for testing or construction of few sequences the webservice can be used.

The source code of RNAlien, as well as the webserver is open source and available via GitHub (License GPL-3):

TaxonomyTools which can be used to visualise the organisms included in a RNAlien result can be found here (License GPL-3):

For instruction how to use RNAlien please see the Help page.


Installation via cabal-install:

 cabal install RNAlien


Versions1.0.0, 1.0.0, 1.1.0, 1.1.1, 1.1.3, 1.2.4, 1.2.5, 1.2.6, 1.2.8, 1.2.9, 1.3.0, 1.3.1, 1.3.7
Change logNone available
Dependenciesbase (>=4.5 && <5), biocore, biofasta, BlastHTTP, blastxml (>=0.3.2), bytestring, cassava, ClustalParser (>=1.1.0), cmdargs, containers, directory, edit-distance, either-unwrap, EntrezHTTP (>=1.0.0), filepath, hierarchical-clustering, HTTP, matrix, parsec, process, random, RNAlien, split, Taxonomy (>=1.0.1), time, vector, ViennaRNAParser (>=1.2.6) [details]
AuthorFlorian Eggenhofer
ExecutablesSelectSequences, RNAlienStatistics, RNAlien
UploadedThu Oct 29 15:41:00 UTC 2015 by FlorianEggenhofer




Maintainers' corner

For package maintainers and hackage trustees