RNAlien: Unsupervized construction of RNA family models

[ bioinformatics, gpl, library, program ] [ Propose Tags ]

RNAlien is a tool for automatic construction of RNAfamily models from a single sequence.

It is available as a commandline tool, for testing or construction of few sequences the webservice can be used.

The source code of RNAlien, as well as the webserver is open source and available via GitHub (License GPL-3):

TaxonomyTools which can be used to visualise the organisms included in a RNAlien result can be found here (License GPL-3):

For instruction how to use RNAlien please see the Help page.

Dependencies:

Installation via cabal-install:

cabal install RNAlien
Versions 1.0.0, 1.1.0, 1.1.1, 1.1.3, 1.2.4, 1.2.5, 1.2.6, 1.2.8, 1.2.9, 1.3.0, 1.3.1, 1.3.7
Dependencies aeson, base (>=4.5 && <5), biocore, biofasta, BlastHTTP (>=1.2.1), blastxml (>=0.3.2), bytestring, cassava, ClustalParser (>=1.2.0), cmdargs, containers, directory, edit-distance, either-unwrap, EntrezHTTP (>=1.0.3), filepath, hierarchical-clustering, HTTP, http-conduit, http-types, hxt, matrix, network, parsec, process, pureMD5, random, RNAlien, split, Taxonomy (>=1.0.2), text, text-metrics, time, transformers, vector, ViennaRNAParser (>=1.3.1) [details]
License GPL-3.0-only
Author Florian Eggenhofer
Maintainer egg@tbi.univie.ac.at
Category Bioinformatics
Source repo head: git clone https://github.com/eggzilla/RNAlien
this: git clone https://github.com/eggzilla/RNAlien/tree/1.2.9(tag 1.2.9)
Uploaded by FlorianEggenhofer at Sun Jan 15 22:35:38 UTC 2017
Distributions NixOS:1.3.7
Executables RNAcentralHTTPRequest, cmsearchToBed, SelectSequences, RNAlienStatistics, RNAlien
Downloads 2473 total (8 in the last 30 days)
Rating 2.0 (votes: 1) [estimated by rule of succession]
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Status Docs not available [build log]
All reported builds failed as of 2017-01-15 [all 3 reports]
Hackage Matrix CI

Modules

  • Bio
    • Bio.InfernalParser
    • Bio.RNAcentralHTTP
    • Bio.RNAlienData
    • Bio.RNAlienLibrary

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