The BlastHTTP package

[Tags:gpl, library]

Searches for a provided nucleotide or protein sequence with the NCBI Blast REST service and returns a blast result in xml format as BlastResult datatype.

For more information on BLAST refer to: http://blast.ncbi.nlm.nih.gov/Blast.cgi.

Information on the webservice can be found at: http://www.ncbi.nlm.nih.gov/BLAST/developer.shtml.

If you plan to submit more than 20 searches in one session, please look up the Usage Guidelines in the webservice information.


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Properties

Versions 0.0.1, 1.0.0, 1.0.1, 1.2.0, 1.2.1
Change log changelog
Dependencies base (>=4.5 && <5), biocore, biofasta, blastxml, bytestring, conduit, HTTP, http-conduit, hxt, mtl, network, transformers [details]
License GPL-3
Author Florian Eggenhofer
Maintainer florian.eggenhofer@univie.ac.at
Stability Unknown
Category Bioinformatics
Home page https://github.com/eggzilla/BlastHTTP
Source repository head: git clone https://github.com/eggzilla/BlastHTTP
this: git clone https://github.com/eggzilla/BlastHTTP/tree/1.2.1(tag 1.2.1)
Uploaded Sat Nov 12 20:15:06 UTC 2016 by FlorianEggenhofer
Distributions LTSHaskell:1.2.1, NixOS:1.2.1, Stackage:1.2.1, Tumbleweed:1.2.1
Downloads 1352 total (68 in the last 30 days)
Votes
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Status Docs available [build log]
Last success reported on 2016-11-16 [all 1 reports]

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Readme for BlastHTTP

Readme for BlastHTTP-1.2.1

BlastHTTP Hackage Build Status

Haskell cabal libary for submission and result retrieval from the NCBI Blast REST webservice

Changes:

Version 1.2.0:

Added experimental support for the european bioinformatics institute blast REST interface Added support for multiple sequences in one request

Version 1.0.0:

Added optionalArgument parameter to BlastHTTP datatype and removed EntrezQuery. This has the advantage that any additional argument can be supplied, not only EntrezQuery strings.

Version 0.0.1:

Initial Version