BlastHTTP: Libary to interface with the NCBI blast REST interface

[ bioinformatics, gpl, library ] [ Propose Tags ]

Searches for a provided nucleotide or protein sequence with the NCBI Blast REST service and returns a blast result in xml format as BlastResult datatype.

For more information on BLAST refer to: http://blast.ncbi.nlm.nih.gov/Blast.cgi.

Information on the webservice can be found at: http://www.ncbi.nlm.nih.gov/BLAST/developer.shtml.

If you plan to submit more than 20 searches in one session, please look up the Usage Guidelines in the webservice information.


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Versions [RSS] [faq] 0.0.1, 1.0.0, 1.0.1, 1.2.0, 1.2.1, 1.3.0, 1.4.0, 1.4.1, 1.4.2
Change log ChangeLog.md
Dependencies base (>=4.5 && <5), BiobaseBlast (==0.3.3.*), BiobaseFasta (==0.4.0.*), bytestring, conduit, either-unwrap, HTTP, http-conduit, hxt, mtl, network (==2.8.0.0), transformers, zip-archive [details]
License GPL-3.0-only
Copyright Florian Eggenhofer
Author Florian Eggenhofer, Christian Hoener zu Siederdissen
Maintainer egg@informatik.uni-freiburg.de
Category Bioinformatics
Home page https://github.com/eggzilla/BlastHTTP
Source repo head: git clone https://github.com/eggzilla/BlastHTTP
this: git clone https://github.com/eggzilla/BlastHTTP/tree/1.4.2(tag 1.4.2)
Uploaded by FlorianEggenhofer at 2021-06-05T21:19:54Z
Distributions NixOS:1.4.2
Downloads 6545 total (57 in the last 30 days)
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Status Hackage Matrix CI
Docs available [build log]
Last success reported on 2021-06-05 [all 1 reports]

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Readme for BlastHTTP-1.4.2

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BlastHTTP Hackage github action: CI

Haskell cabal libary for submission and result retrieval from the NCBI Blast REST webservice