flower: Analyze 454 flowgrams (.SFF files)

[ bioinformatics, program ] [ Propose Tags ]
Versions 0.1, 0.1.1, 0.1.2, 0.2, 0.3, 0.4, 0.5, 0.6, 0.6.1, 0.6.3, 0.6.5, 0.7, 0.7.2
Dependencies array (>=0.1), base (>=3 && <5), binary (==0.4.*), bio (>=0.4.2), bytestring (>=0.9.1), cmdargs (<=0.1.1), containers, random [details]
License LicenseRef-GPL
Author Ketil Malde
Maintainer Ketil Malde <ketil@malde.org>
Category Bioinformatics
Home page http://malde.org/~ketil/biohaskell/flower
Uploaded by KetilMalde at Tue Sep 14 07:10:34 UTC 2010
Distributions NixOS:0.7.2
Executables flowt, frename, frecover, flowselect, flower
Downloads 4661 total (37 in the last 30 days)
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Status Docs not available [build log]
All reported builds failed as of 2016-12-28 [all 7 reports]
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flower - FLOWgram ExtractoR tools

The flower executable reads files in SFF-format and produces various output, including sequences with quality, or flowgram data in tabular format.

The fselect executable extracts reads from SFF-files, generating a new SFF-file with a subset of the reads based on various criteria.

Sometimes SFF files will appear to be corrupted, with all-zero blocks in the file. The frecover program ignores these and tries to resync with the file after an invalid region. This was likely a one-time bug in the 454 software, so this program is probably not so useful any more.

The Darcs repository is at http://malde.org/~ketil/biohaskell/flower.


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