The flower package
flower - FLOWgram ExtractoR tools
The flower executable reads files in SFF-format and produces various output, including sequences with quality, or flowgram data in tabular format.
The fselect executable extracts reads from SFF-files, generating a new SFF-file with a subset of the reads based on various criteria.
Sometimes SFF files will appear to be corrupted, with all-zero blocks in the file. The frecover program ignores these and tries to resync with the file after an invalid region. This was likely a one-time bug in the 454 software, so this program is probably not so useful any more.
The Darcs repository is at http://malde.org/~ketil/biohaskell/flower.
|Versions||0.1, 0.1.1, 0.1.2, 0.2, 0.3, 0.4, 0.5, 0.6, 0.6.1, 0.6.3, 0.6.5, 0.7|
|Dependencies||array (≥0.1), base (≥3 & <5), binary (0.4.*), bio (≥0.4.2), bytestring (≥0.9.1), cmdargs (≤0.1.1), containers, random|
|Maintainer||Ketil Malde <email@example.com>|
|Executables||flowt, frename, frecover, flowselect, flower|
|Upload date||Tue Sep 14 07:10:34 UTC 2010|