The flower package
flower - FLOWgram ExtractoR tools
The flower executable reads files in SFF-format and produces various output,
including sequences with quality, or flowgram data in tabular format. By default,
it outputs a textual representation of the data in the SFF-file, much like
sffinfo from Roche does.
The fselect executable extracts reads from SFF-files, generating a new SFF-file with a subset of the reads based on various criteria.
Sometimes SFF files will appear to be corrupted, with all-zero blocks in the file. The frecover program ignores these and tries to resync with the file after an invalid region. This was likely a one-time bug in the 454 software, so this program is probably not so useful any more.
|Versions||0.1, 0.1.1, 0.1.2, 0.2, 0.3, 0.4, 0.5, 0.6, 0.6.1, 0.6.3, 0.6.5, 0.7, 0.7.2|
|Dependencies||array (>=0.1), base (>=3 && <5), binary (==0.4.*), bio (>=0.4.8), bytestring (>=0.9.1), cmdargs (>=0.5), containers, mtl, random [details]|
|Maintainer||Ketil Malde <firstname.lastname@example.org>|
|Uploaded||Fri Nov 5 13:38:07 UTC 2010 by KetilMalde|
|Executables||flowt, frename, frecover, flowselect, flower|
|Downloads||4638 total (44 in the last 30 days)|
|Rating||(no votes yet) [estimated by rule of succession]|
|Status||Docs not available [build log]
Successful builds reported [all 7 reports]
Hackage Matrix CI
For package maintainers and hackage trustees