The flower package

[Tags: gpl, program]

flower - FLOWgram ExtractoR tools

This is now obsolete, please install the biosff library (which includes the flower exectuable) instead.

The flower executable reads files in SFF-format and produces various output, including sequences with quality, or flowgram data in tabular format. By default, it outputs a textual representation of the data in the SFF-file, much like sffinfo from Roche does.

The flowselect executable extracts reads from SFF-files, generating a new SFF-file with a subset of the reads based on various quality criteria.

The flowt program removes (artificial) duplicates from SFF files. It's currently a work in progress, but included if you'd like to play with it. It's faster than other approaches (e.g. CD-HIT), and ought to be more sensitive and specific, but this needs to be proven.


Properties

Versions0.1, 0.1.1, 0.1.2, 0.2, 0.3, 0.4, 0.5, 0.6, 0.6.1, 0.6.3, 0.6.5, 0.7, 0.7.2
Dependenciesarray (>=0.1), base (>=3 && <5), binary (==0.4.*), bio (>0.4.9), bytestring (>=0.9.1), cmdargs (>=0.5), containers, mtl, random
LicenseGPL
AuthorKetil Malde
MaintainerKetil Malde <ketil@malde.org>
CategoryBioinformatics
Home pagehttp://biohaskell.org/Applications/Flower
Executablesflowt, flowselect, flower
Upload dateThu Sep 19 06:28:19 UTC 2013
Uploaded byKetilMalde
Downloads959 total (87 in last 30 days)

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