The flower package
flower - FLOWgram ExtractoR tools
The flower executable reads files in SFF-format and produces various output, including sequences with quality, or flowgram data in tabular format. By default, it outputs a textual representation of the data in the SFF-file, much like sffinfo from Roche does.
The fselect executable extracts reads from SFF-files, generating a new SFF-file with a subset of the reads based on various criteria.
Sometimes SFF files will appear to be corrupted, with all-zero blocks in the file. The frecover program ignores these and tries to resync with the file after an invalid region. This was likely a one-time bug in the 454 software, so this program is probably not so useful any more.
Properties
| Versions | 0.1, 0.1.1, 0.1.2, 0.2, 0.3, 0.4, 0.5, 0.6, 0.6.1, 0.6.3, 0.6.5, 0.7 |
|---|---|
| Dependencies | array (≥0.1), base (≥3 & <5), binary (0.4.*), bio (≥0.4.9), bytestring (≥0.9.1), cmdargs (≥0.5), containers, mtl, random |
| License | GPL |
| Author | Ketil Malde |
| Maintainer | Ketil Malde <ketil@malde.org> |
| Category | Bioinformatics |
| Home page | http://biohaskell.org/Applications/Flower |
| Executables | flowt, frename, frecover, flowselect, flower |
| Upload date | Tue Jan 25 23:09:20 UTC 2011 |
| Uploaded by | KetilMalde |
Downloads
- flower-0.7.tar.gz (Cabal source package)
- package description (included in the package)