xsact: Cluster EST sequences
[ bioinformatics, program ] [ Propose Tags ]
Xsact is an EST clustering program with a variety of output options. This package exposes the internal libraries, and provides 4 binaries:
xsact; implements a complete multiple-matching clustering algorithm.
xplit; This implements a simple splitter for xsact's UniGene-formatted files. Useful if you want to run an assembler on individual clusters.
xtract; the eXperimental TRanscript Assembly/Consensus Tool. The idea is to construct the splice graph from each EST cluster in the input, by first constructing and then traversing the de Bruijn graph of $k-1$-words.
- xsact-1.7.3.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
For package maintainers and hackage trustees
- No Candidates
|Versions [RSS]||1.6, 1.7.2, 1.7.3|
|Dependencies||array, base (>3 && <4.2), containers, directory, process, random, unix [details]|
|Maintainer||Ketil Malde <email@example.com>|
|Uploaded||by KetilMalde at 2010-09-09T20:31:18Z|
|Reverse Dependencies||1 direct, 0 indirect [details]|
|Executables||xtract, xplit, xsact|
|Downloads||2432 total (7 in the last 30 days)|
|Rating||(no votes yet) [estimated by Bayesian average]|
|Status||Docs not available [build log]
All reported builds failed as of 2016-12-29 [all 7 reports]