The xsact package
Xsact is an EST clustering program with a variety of output options. This package exposes the internal libraries, and provides 4 binaries:
xsact; implements a complete multiple-matching clustering algorithm.
xcerpt; Extract sequences matching a list of labels.
xplit; This implements a simple splitter for xsact's UniGene-formatted files. Useful if you want to run an assembler on individual clusters.
xtract; the eXperimental TRanscript Assembly/Consensus Tool. The idea is to construct the splice graph from each EST cluster in the input, by first constructing and then traversing the de Bruijn graph of $k-1$-words.
|Versions||1.6, 1.7.2, 1.7.3|
|Dependencies||array, base, containers, directory, process, random, unix [details]|
|Maintainer||Ketil Malde <firstname.lastname@example.org>|
|Uploaded||Sat Mar 8 02:37:30 UTC 2008 by GwernBranwen|
|Executables||xtract, xplit, xcerpt, xsact|
|Downloads||1171 total (12 in the last 30 days)|
|Rating||(no votes yet) [estimated by rule of succession]|
|Status||Docs uploaded by user
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