BiobaseBlast: BLAST-related tools

[ bioinformatics, gpl, library ] [ Propose Tags ]

This library contains BLAST-related functionality:

The matrices are currently not provided but can be found here:

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Dependencies aeson (>=1.0), attoparsec (>=0.13), base (>=4.7 && <5.0), binary (>=0.7), BiobaseTypes (==0.1.2.*), BiobaseXNA (==0.9.3.*), bytestring, cereal (>=0.4), containers, deepseq (>=1.3), directory, PrimitiveArray (==0.8.0.*), vector (>=0.10), vector-th-unbox (>=0.2) [details]
License GPL-3.0-only
Copyright Christian Hoener zu Siederdissen, 2013 - 2017
Author Christian Hoener zu Siederdissen, Florian Eggenhofer
Category Bioinformatics
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Source repo head: git clone
this: git clone
Uploaded by ChristianHoener at Thu Sep 28 14:59:55 UTC 2017
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Downloads 1713 total (56 in the last 30 days)
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Status Hackage Matrix CI
Docs not available [build log]
Last success reported on 2017-09-28 [all 2 reports]


  • Biobase
    • Biobase.BLAST
      • Biobase.BLAST.Import
      • Biobase.BLAST.Types
    • Biobase.SubstMatrix
      • Biobase.SubstMatrix.Import


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Readme for BiobaseBlast-

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This library contains BLAST-related functionality.


Christian Hoener zu Siederdissen
Leipzig University, Leipzig, Germany