BiobaseTypes: Collection of types for bioinformatics

[ bioinformatics, bsd3, data-structures, library ] [ Propose Tags ]

Types used in a number of bioinformatics libraries.


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Versions 0.0.2.1, 0.0.2.2, 0.1.1.0, 0.1.1.1, 0.1.2.0, 0.1.2.1, 0.1.3.0
Change log changelog.md
Dependencies aeson (>=0.8), base (>=4.7 && <5.0), bimaps (==0.1.0.*), binary (>=0.7), bytestring, cereal (>=0.4), cereal-text (>=0.1), cereal-vector (>=0.2), containers, data-default (>=0.5), deepseq (>=1.4), hashable (>=1.2), intern (>=0.9), lens (>=4.0), mtl, primitive (>=0.5), PrimitiveArray (==0.8.0.*), QuickCheck (>=2.7), string-conversions (>=0.4), text (>=1.0), text-binary (>=0.2), utf8-string (>=1.0), vector (>=0.10), vector-binary-instances (>=0.2), vector-th-unbox (>=0.2) [details]
License BSD-3-Clause
Copyright Christian Hoener zu Siederdissen, 2015 - 2017
Author Christian Hoener zu Siederdissen, 2015 - 2017
Maintainer choener@bioinf.uni-leipzig.de
Category Data Structures, Bioinformatics
Home page https://github.com/choener/BiobaseTypes
Bug tracker https://github.com/choener/BiobaseTypes/issues
Source repo head: git clone git://github.com/choener/BiobaseTypes
Uploaded by ChristianHoener at Thu Nov 23 22:02:42 UTC 2017
Distributions NixOS:0.1.3.0
Downloads 2521 total (64 in the last 30 days)
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Status Docs available [build log]
Last success reported on 2017-11-23 [all 1 reports]
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Readme for BiobaseTypes-0.1.3.0

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BiobaseTypes

A bunch of types in use in different modules:

  • numerical small and large numbers
  • Gibbs free energy change
  • phantom-typed linear indices: these encode the (rather annoying) habit of computational biology of having both 0-based and 1-based data

Contact

Christian Hoener zu Siederdissen
Leipzig University, Leipzig, Germany
choener@bioinf.uni-leipzig.de
http://www.bioinf.uni-leipzig.de/~choener/