The BiobaseTypes package

[Tags:bsd3, library, test]

Types used in a number of bioinformatics libraries.


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Properties

Versions 0.0.2.1, 0.0.2.2, 0.1.1.0, 0.1.1.1, 0.1.2.0
Change log changelog.md
Dependencies aeson (>=0.8 && <1.1), base (>=4.7 && <5.0), bimaps (==0.1.0.*), binary (==0.7.*), cereal (>=0.4 && <0.6), cereal-text (==0.1.*), cereal-vector (==0.2.*), data-default (==0.5.*), deepseq (>=1.3 && <1.5), hashable (==1.2.*), intern (==0.9.*), log-domain (==0.10.*), primitive (>=0.5 && <0.7), PrimitiveArray (==0.7.1.*), QuickCheck (>=2.7 && <2.9), stringable (>=0.1.3 && <0.2), text (>=1.0 && <1.3), text-binary (==0.2.*), vector (>=0.10 && <0.12), vector-binary-instances (==0.2.*), vector-th-unbox (==0.2.*) [details]
License BSD3
Copyright Christian Hoener zu Siederdissen, 2015 - 2016
Author Christian Hoener zu Siederdissen, 2015 - 2016
Maintainer choener@bioinf.uni-leipzig.de
Stability experimental
Category Data Structures, Bioinformatics
Home page https://github.com/choener/BiobaseTypes
Bug tracker https://github.com/choener/BiobaseTypes/issues
Source repository head: git clone git://github.com/choener/BiobaseTypes
Uploaded Thu Sep 1 23:08:10 UTC 2016 by ChristianHoener
Distributions NixOS:0.1.2.0
Downloads 895 total (23 in the last 30 days)
Votes
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Status Docs pending
Build status unknown [no reports yet]

Modules

  • Biobase
    • Types
      • Biobase.Types.Accession
      • Biobase.Types.Bitscore
      • Biobase.Types.Energy
      • Biobase.Types.Evalue
      • Biobase.Types.Index
        • Biobase.Types.Index.Type
      • Biobase.Types.Names
        • Biobase.Types.Names.Internal
      • Biobase.Types.NumericalExtremes
      • Biobase.Types.Odds
      • Biobase.Types.Strand
      • Biobase.Types.Taxonomy

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Maintainer's Corner

For package maintainers and hackage trustees

Readme for BiobaseTypes

Readme for BiobaseTypes-0.1.2.0

Build Status

BiobaseTypes

A bunch of types in use in different modules:

  • numerical small and large numbers
  • Gibbs free energy change
  • phantom-typed linear indices: these encode the (rather annoying) habit of computational biology of having both 0-based and 1-based data

Contact

Christian Hoener zu Siederdissen
Leipzig University, Leipzig, Germany
choener@bioinf.uni-leipzig.de
http://www.bioinf.uni-leipzig.de/~choener/