BlastHTTP: Libary to interface with the NCBI blast REST interface
Searches for a provided nucleotide or protein sequence with the NCBI Blast REST service and returns a blast result in xml format as BlastResult datatype.
For more information on BLAST refer to: http://blast.ncbi.nlm.nih.gov/Blast.cgi.
Information on the webservice can be found at: http://www.ncbi.nlm.nih.gov/BLAST/developer.shtml.
If you plan to submit more than 20 searches in one session, please look up the Usage Guidelines in the webservice information.
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- BlastHTTP-1.4.0.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
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| Versions [RSS] | 0.0.1, 1.0.0, 1.0.1, 1.2.0, 1.2.1, 1.3.0, 1.4.0, 1.4.1, 1.4.2 |
|---|---|
| Change log | changelog |
| Dependencies | base (>=4.5 && <5), BiobaseBlast (>=0.3.0 && <0.3.1), BiobaseFasta (>=0.3.0 && <0.3.1), bytestring, conduit, either-unwrap, HTTP, http-conduit, hxt, mtl, network (==2.8.0.0), transformers, zip-archive [details] |
| License | GPL-3.0-only |
| Copyright | Florian Eggenhofer |
| Author | Florian Eggenhofer, Christian Hoener zu Siederdissen |
| Maintainer | egg@informatik.uni-freiburg.de |
| Category | Bioinformatics |
| Home page | https://github.com/eggzilla/BlastHTTP |
| Source repo | head: git clone https://github.com/eggzilla/BlastHTTP this: git clone https://github.com/eggzilla/BlastHTTP/tree/1.4.0(tag 1.4.0) |
| Uploaded | by FlorianEggenhofer at 2019-06-18T11:06:05Z |
| Distributions | |
| Reverse Dependencies | 2 direct, 0 indirect [details] |
| Downloads | 7653 total (25 in the last 30 days) |
| Rating | (no votes yet) [estimated by Bayesian average] |
| Your Rating | |
| Status | Docs available [build log] Last success reported on 2019-06-18 [all 1 reports] |
Readme for BlastHTTP-1.4.0
[back to package description]BlastHTTP 
Haskell cabal libary for submission and result retrieval from the NCBI Blast REST webservice
Changes:
Version 1.2.0:
Added experimental support for the european bioinformatics institute blast REST interface Added support for multiple sequences in one request
Version 1.0.0:
Added optionalArgument parameter to BlastHTTP datatype and removed EntrezQuery. This has the advantage that any additional argument can be supplied, not only EntrezQuery strings.
Version 0.0.1:
Initial Version