RNAFold: RNA secondary structure prediction
RNAfold v2 using the ADPfusion library. The RNAfold algorithm is used to determine how fast we can be compared to a highly optimized C program.
Please use GHC 7.6 or newer.
NOTE I'd like to rename this package to RNAfold, like the C implementation. Do not install "globally", especially if you normally use RNAfold from the ViennaRNA package, for obvious reasons.
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- RNAFold-1.99.3.4.tar.gz [browse] (Cabal source package)
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Versions [RSS] | 0.0.2.1, 1.99.1.0, 1.99.1.1, 1.99.1.2, 1.99.1.3, 1.99.3.4 |
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Dependencies | ADPfusion (>=0.2.0.0), base (>=4 && <5), BiobaseTurner (>=0.3.1.1), BiobaseVienna (>=0.3), BiobaseXNA (>=0.7), cmdargs (>=0.10), containers, deepseq (>=1.3), lens (>=3.8), primitive (>=0.5), PrimitiveArray (>=0.5), repa (>=3.2), RNAFold, strict (>=0.3.2), vector (>=0.10) [details] |
License | GPL-3.0-only |
Copyright | Christian Hoener zu Siederdissen, 2010-2013 |
Author | Christian Hoener zu Siederdissen (Haskell), Ivo L. Hofacker et al (ViennaRNA), 2010-2013 |
Maintainer | choener@tbi.univie.ac.at |
Category | Bioinformatics |
Home page | http://www.tbi.univie.ac.at/~choener/adpfusion |
Source repo | head: git clone git://github.com/choener/RNAfold |
Uploaded | by ChristianHoener at 2013-12-06T23:47:37Z |
Distributions | |
Reverse Dependencies | 2 direct, 0 indirect [details] |
Executables | RNAEval, RNAFold |
Downloads | 6262 total (4 in the last 30 days) |
Rating | (no votes yet) [estimated by Bayesian average] |
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Status | Docs available [build log] Successful builds reported [all 1 reports] |